Index

E

error_msg (C macro)

F

float16_type (C++ struct) float16_type::bits (C++ member)

float16_type::operator float (C++ function) float16_type::operator!= (C++ function) float16_type::operator== (C++ function)

G

gemmi (C++ type), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27], [28], [29], [30], [31], [32], [33], [34], [35], [36], [37], [38], [39], [40], [41], [42], [43], [44], [45], [46], [47], [48], [49], [50], [51], [52], [53], [54], [55], [56], [57], [58], [59], [60], [61], [62], [63], [64], [65], [66], [67], [68], [69], [70], [71], [72], [73], [74], [75], [76], [77], [78], [79], [80], [81], [82], [83], [84], [85], [86], [87], [88], [89], [90], [91], [92], [93], [94], [95], [96], [97], [98], [99], [100], [101], [102], [103], [104], [105] gemmi::add_asu_f_phi_to_float_vector (C++ function) gemmi::add_automatic_links (C++ function) gemmi::add_chemcomp_to_block (C++ function) gemmi::add_dictionary_blocks (C++ function) gemmi::add_distinct_altlocs (C++ function), [1] gemmi::add_entity_ids (C++ function) gemmi::add_entity_types (C++ function), [1] gemmi::add_friedel_mates (C++ function) gemmi::add_microhetero_to_sequences (C++ function) gemmi::add_minimal_mmcif_data (C++ function) gemmi::add_soft_edge_to_mask (C++ function) gemmi::add_tls_group_ids (C++ function) gemmi::Addends (C++ struct) gemmi::Addends::clear (C++ function) gemmi::Addends::get (C++ function) gemmi::Addends::set (C++ function) gemmi::Addends::size (C++ function) gemmi::Addends::subtract_z (C++ function) gemmi::Addends::values (C++ member) gemmi::adjust_hydrogen_distances (C++ function) gemmi::adp_symmetry_constraints (C++ function) gemmi::align_sequence_to_polymer (C++ function) gemmi::align_sequences (C++ function) gemmi::align_string_sequences (C++ function) gemmi::AlignmentResult (C++ struct) gemmi::AlignmentResult::add_gaps (C++ function) gemmi::AlignmentResult::backtrack_to_cigar (C++ function) gemmi::AlignmentResult::calculate_identity (C++ function) gemmi::AlignmentResult::cigar (C++ member) gemmi::AlignmentResult::cigar_str (C++ function) gemmi::AlignmentResult::count_matches (C++ function) gemmi::AlignmentResult::formatted (C++ function) gemmi::AlignmentResult::input_length (C++ function) gemmi::AlignmentResult::Item (C++ struct) gemmi::AlignmentResult::Item::len (C++ function) gemmi::AlignmentResult::Item::op (C++ function) gemmi::AlignmentResult::Item::value (C++ member) gemmi::AlignmentResult::match_count (C++ member) gemmi::AlignmentResult::match_string (C++ member) gemmi::AlignmentResult::push_cigar (C++ function) gemmi::AlignmentResult::score (C++ member) gemmi::AlignmentScoring (C++ struct) gemmi::AlignmentScoring::bad_gapo (C++ member) gemmi::AlignmentScoring::blosum62 (C++ function) gemmi::AlignmentScoring::gape (C++ member) gemmi::AlignmentScoring::gapo (C++ member) gemmi::AlignmentScoring::good_gapo (C++ member) gemmi::AlignmentScoring::match (C++ member) gemmi::AlignmentScoring::matrix_encoding (C++ member) gemmi::AlignmentScoring::mismatch (C++ member) gemmi::AlignmentScoring::partial_model (C++ function) gemmi::AlignmentScoring::score_matrix (C++ member) gemmi::AlignmentScoring::simple (C++ function) gemmi::all_alnums (C++ function) gemmi::alpha_up (C++ function) gemmi::angle_abs_diff (C++ function) gemmi::angle_z (C++ function) gemmi::AnyStream (C++ struct) gemmi::AnyStream::copy_line (C++ function) gemmi::AnyStream::getc (C++ function) gemmi::AnyStream::gets (C++ function) gemmi::AnyStream::read (C++ function) gemmi::AnyStream::read_rest (C++ function) gemmi::AnyStream::skip (C++ function) gemmi::AnyStream::tell (C++ function) gemmi::AnyStream::~AnyStream (C++ function) gemmi::append_op_fraction (C++ function) gemmi::append_to_str (C++ function), [1], [2], [3] gemmi::are_connected (C++ function) gemmi::are_connected2 (C++ function) gemmi::are_connected3 (C++ function) gemmi::as_refln_blocks (C++ function) gemmi::as_utf8 (C++ function) gemmi::Assembly (C++ struct) gemmi::Assembly::absa (C++ member) gemmi::Assembly::Assembly (C++ function), [1] gemmi::Assembly::author_determined (C++ member) gemmi::Assembly::Gen (C++ struct) gemmi::Assembly::Gen::chains (C++ member) gemmi::Assembly::Gen::operators (C++ member) gemmi::Assembly::Gen::subchains (C++ member) gemmi::Assembly::generators (C++ member) gemmi::Assembly::more (C++ member) gemmi::Assembly::name (C++ member) gemmi::Assembly::oligomeric_count (C++ member) gemmi::Assembly::oligomeric_details (C++ member) gemmi::Assembly::Operator (C++ struct) gemmi::Assembly::Operator::name (C++ member) gemmi::Assembly::Operator::transform (C++ member) gemmi::Assembly::Operator::type (C++ member) gemmi::Assembly::software_determined (C++ member) gemmi::Assembly::software_name (C++ member) gemmi::Assembly::special_kind (C++ member) gemmi::Assembly::SpecialKind (C++ enum) gemmi::Assembly::SpecialKind::CompleteIcosahedral (C++ enumerator) gemmi::Assembly::SpecialKind::CompletePoint (C++ enumerator) gemmi::Assembly::SpecialKind::NA (C++ enumerator) gemmi::Assembly::SpecialKind::RepresentativeHelical (C++ enumerator) gemmi::Assembly::ssa (C++ member) gemmi::assign_b_iso (C++ function), [1] gemmi::assign_best_sequences (C++ function) gemmi::assign_het_flags (C++ function), [1] gemmi::assign_label_seq_id (C++ function) gemmi::assign_label_seq_to_polymer (C++ function) gemmi::assign_residue_ss_from_file (C++ function), [1] gemmi::assign_serial_numbers (C++ function), [1] gemmi::assign_subchain_names (C++ function) gemmi::assign_subchains (C++ function) gemmi::Asu (C++ enum) gemmi::Asu::Any (C++ enumerator) gemmi::Asu::Different (C++ enumerator) gemmi::Asu::Same (C++ enumerator) gemmi::AsuBrick (C++ struct) gemmi::AsuBrick::AsuBrick (C++ function) gemmi::AsuBrick::denom (C++ member) gemmi::AsuBrick::get_extent (C++ function) gemmi::AsuBrick::get_upper_limit (C++ function) gemmi::AsuBrick::incl (C++ member) gemmi::AsuBrick::size (C++ member) gemmi::AsuBrick::str (C++ function) gemmi::AsuBrick::uvw_end (C++ function) gemmi::AsuBrick::volume (C++ member) gemmi::AsuData (C++ struct) gemmi::AsuData::ensure_asu (C++ function) gemmi::AsuData::ensure_sorted (C++ function) gemmi::AsuData::get_f (C++ function) gemmi::AsuData::get_hkl (C++ function) gemmi::AsuData::get_phi (C++ function) gemmi::AsuData::load_values (C++ function), [1] gemmi::AsuData::set_value_from_array (C++ function), [1], [2], [3] gemmi::AsuData::size (C++ function) gemmi::AsuData::spacegroup (C++ function) gemmi::AsuData::spacegroup_ (C++ member) gemmi::AsuData::stride (C++ function) gemmi::AsuData::unit_cell (C++ function) gemmi::AsuData::unit_cell_ (C++ member) gemmi::AsuData::v (C++ member) gemmi::Atom (C++ struct), [1] gemmi::Atom::altloc (C++ member), [1] gemmi::Atom::altloc_matches (C++ function), [1] gemmi::Atom::altloc_or (C++ function), [1] gemmi::Atom::aniso (C++ member), [1] gemmi::Atom::b_eq (C++ function), [1] gemmi::Atom::b_iso (C++ member), [1] gemmi::Atom::calc_flag (C++ member), [1] gemmi::Atom::charge (C++ member), [1] gemmi::Atom::element (C++ member), [1] gemmi::Atom::empty_copy (C++ function), [1] gemmi::Atom::flag (C++ member), [1] gemmi::Atom::fraction (C++ member), [1] gemmi::Atom::group_key (C++ function), [1] gemmi::Atom::has_altloc (C++ function), [1] gemmi::Atom::is_hydrogen (C++ function), [1] gemmi::Atom::name (C++ member), [1] gemmi::Atom::occ (C++ member), [1] gemmi::Atom::padded_name (C++ function), [1] gemmi::Atom::pos (C++ member), [1] gemmi::Atom::same_conformer (C++ function), [1] gemmi::Atom::serial (C++ member), [1] gemmi::Atom::tls_group_id (C++ member), [1] gemmi::Atom::what (C++ function), [1] gemmi::atom_match_with_alias (C++ function) gemmi::atom_matches (C++ function), [1] gemmi::atom_str (C++ function), [1], [2], [3], [4] gemmi::atom_to_site (C++ function) gemmi::AtomAddress (C++ struct) gemmi::AtomAddress::altloc (C++ member) gemmi::AtomAddress::atom_name (C++ member) gemmi::AtomAddress::AtomAddress (C++ function), [1], [2] gemmi::AtomAddress::chain_name (C++ member) gemmi::AtomAddress::operator== (C++ function) gemmi::AtomAddress::res_id (C++ member) gemmi::AtomAddress::str (C++ function) gemmi::AtomGroup (C++ type), [1] gemmi::AtomGroup_ (C++ struct), [1] gemmi::AtomGroup_::by_altloc (C++ function), [1] gemmi::AtomGroup_::name (C++ function), [1] gemmi::AtomicRadiiSet (C++ enum) gemmi::AtomicRadiiSet::Cctbx (C++ enumerator) gemmi::AtomicRadiiSet::Constant (C++ enumerator) gemmi::AtomicRadiiSet::Refmac (C++ enumerator) gemmi::AtomicRadiiSet::VanDerWaals (C++ enumerator) gemmi::AtomNameElement (C++ struct) gemmi::AtomNameElement::atom_name (C++ member) gemmi::AtomNameElement::el (C++ member) gemmi::authors (C++ member) gemmi::AxisOrder (C++ enum), [1] gemmi::AxisOrder::Unknown (C++ enumerator), [1] gemmi::AxisOrder::XYZ (C++ enumerator), [1] gemmi::AxisOrder::ZYX (C++ enumerator), [1] gemmi::BasicInput (C++ class) gemmi::BasicInput::basepath (C++ function) gemmi::BasicInput::BasicInput (C++ function) gemmi::BasicInput::create_stream (C++ function) gemmi::BasicInput::is_compressed (C++ function) gemmi::BasicInput::is_stdin (C++ function) gemmi::BasicInput::path (C++ function) gemmi::BasicInput::path_ (C++ member) gemmi::BasicInput::uncompress_into_buffer (C++ function) gemmi::BasicRefinementInfo (C++ struct) gemmi::BasicRefinementInfo::cc_fo_fc_free (C++ member) gemmi::BasicRefinementInfo::cc_fo_fc_work (C++ member) gemmi::BasicRefinementInfo::cc_intensity_free (C++ member) gemmi::BasicRefinementInfo::cc_intensity_work (C++ member) gemmi::BasicRefinementInfo::completeness (C++ member) gemmi::BasicRefinementInfo::fsc_free (C++ member) gemmi::BasicRefinementInfo::fsc_work (C++ member) gemmi::BasicRefinementInfo::r_all (C++ member) gemmi::BasicRefinementInfo::r_free (C++ member) gemmi::BasicRefinementInfo::r_work (C++ member) gemmi::BasicRefinementInfo::reflection_count (C++ member) gemmi::BasicRefinementInfo::resolution_high (C++ member) gemmi::BasicRefinementInfo::resolution_low (C++ member) gemmi::BasicRefinementInfo::rfree_set_count (C++ member) gemmi::BasicRefinementInfo::work_set_count (C++ member) gemmi::bessel_i0 (C++ function) gemmi::bessel_i1_over_i0 (C++ function) gemmi::BesselTables_ (C++ struct) gemmi::BesselTables_::P1 (C++ member) gemmi::BesselTables_::P2 (C++ member) gemmi::BesselTables_::Q1 (C++ member) gemmi::BesselTables_::Q2 (C++ member) gemmi::BesselTables_::Q3 (C++ member) gemmi::BidirIterator (C++ struct) gemmi::BidirIterator::BidirIterator (C++ function), [1] gemmi::BidirIterator::const_variant (C++ type) gemmi::BidirIterator::difference_type (C++ type) gemmi::BidirIterator::iterator_category (C++ type) gemmi::BidirIterator::operator const_variant (C++ function) gemmi::BidirIterator::operator!= (C++ function) gemmi::BidirIterator::operator* (C++ function) gemmi::BidirIterator::operator++ (C++ function), [1] gemmi::BidirIterator::operator-- (C++ function), [1] gemmi::BidirIterator::operator-> (C++ function) gemmi::BidirIterator::operator== (C++ function) gemmi::BidirIterator::pointer (C++ type) gemmi::BidirIterator::reference (C++ type) gemmi::BidirIterator::value_type (C++ type) gemmi::Binner (C++ struct) gemmi::Binner::cell (C++ member) gemmi::Binner::dmax_of_bin (C++ function) gemmi::Binner::dmin_of_bin (C++ function) gemmi::Binner::ensure_limits_are_set (C++ function) gemmi::Binner::get_bin (C++ function) gemmi::Binner::get_bin_from_1_d2 (C++ function) gemmi::Binner::get_bin_from_1_d2_hinted (C++ function) gemmi::Binner::get_bin_hinted (C++ function) gemmi::Binner::get_bins (C++ function) gemmi::Binner::get_bins_from_1_d2 (C++ function), [1] gemmi::Binner::limits (C++ member) gemmi::Binner::max_1_d2 (C++ member) gemmi::Binner::Method (C++ enum) gemmi::Binner::Method::Dstar (C++ enumerator) gemmi::Binner::Method::Dstar2 (C++ enumerator) gemmi::Binner::Method::Dstar3 (C++ enumerator) gemmi::Binner::Method::EqualCount (C++ enumerator) gemmi::Binner::mids (C++ member) gemmi::Binner::min_1_d2 (C++ member) gemmi::Binner::setup (C++ function) gemmi::Binner::setup_from_1_d2 (C++ function) gemmi::Binner::size (C++ function) gemmi::Blob (C++ struct) gemmi::Blob::centroid (C++ member) gemmi::Blob::operator bool (C++ function) gemmi::Blob::peak_pos (C++ member) gemmi::Blob::peak_value (C++ member) gemmi::Blob::score (C++ member) gemmi::Blob::volume (C++ member) gemmi::BlobCriteria (C++ struct) gemmi::BlobCriteria::cutoff (C++ member) gemmi::BlobCriteria::min_peak (C++ member) gemmi::BlobCriteria::min_score (C++ member) gemmi::BlobCriteria::min_volume (C++ member) gemmi::bohrradius (C++ function) gemmi::bond_type_from_string (C++ function) gemmi::bond_type_to_string (C++ function) gemmi::BondIndex (C++ struct) gemmi::BondIndex::add_link (C++ function) gemmi::BondIndex::add_monomer_bonds (C++ function) gemmi::BondIndex::add_oneway_link (C++ function) gemmi::BondIndex::are_linked (C++ function) gemmi::BondIndex::AtomImage (C++ struct) gemmi::BondIndex::AtomImage::atom_serial (C++ member) gemmi::BondIndex::AtomImage::operator== (C++ function) gemmi::BondIndex::AtomImage::same_image (C++ member) gemmi::BondIndex::BondIndex (C++ function) gemmi::BondIndex::graph_distance (C++ function) gemmi::BondIndex::index (C++ member) gemmi::BondIndex::model (C++ member) gemmi::BondType (C++ enum) gemmi::BondType::Aromatic (C++ enumerator) gemmi::BondType::Deloc (C++ enumerator) gemmi::BondType::Double (C++ enumerator) gemmi::BondType::Metal (C++ enumerator) gemmi::BondType::Single (C++ enumerator) gemmi::BondType::Triple (C++ enumerator) gemmi::BondType::Unspec (C++ enumerator) gemmi::Box (C++ struct) gemmi::Box::add_margin (C++ function) gemmi::Box::add_margins (C++ function) gemmi::Box::extend (C++ function) gemmi::Box::get_size (C++ function) gemmi::Box::maximum (C++ member) gemmi::Box::minimum (C++ member) gemmi::Bridge (C++ struct) gemmi::Bridge::partner1 (C++ member) gemmi::Bridge::partner2 (C++ member) gemmi::Bridge::type (C++ member) gemmi::BridgeType (C++ enum) gemmi::BridgeType::AntiParallel (C++ enumerator) gemmi::BridgeType::None (C++ enumerator) gemmi::BridgeType::Parallel (C++ enumerator) gemmi::C4322 (C++ struct) gemmi::C4322::Coef (C++ type) gemmi::C4322::data (C++ member) gemmi::C4322::get (C++ function) gemmi::C4322::has (C++ function) gemmi::CalcFlag (C++ enum), [1] gemmi::CalcFlag::Calculated (C++ enumerator), [1] gemmi::CalcFlag::Determined (C++ enumerator), [1] gemmi::CalcFlag::Dummy (C++ enumerator), [1] gemmi::CalcFlag::NoHydrogen (C++ enumerator), [1] gemmi::CalcFlag::NotSet (C++ enumerator), [1] gemmi::calculate_amplitude_normalizers (C++ function) gemmi::calculate_angle (C++ function) gemmi::calculate_b_aniso_range (C++ function) gemmi::calculate_b_est (C++ function) gemmi::calculate_b_iso_range (C++ function), [1] gemmi::calculate_box (C++ function) gemmi::calculate_center_of_mass (C++ function), [1] gemmi::calculate_chiral_volume (C++ function) gemmi::calculate_correlation (C++ function), [1] gemmi::calculate_cos_obliquity (C++ function) gemmi::calculate_current_rmsd (C++ function) gemmi::calculate_data_statistics (C++ function) gemmi::calculate_dihedral (C++ function) gemmi::calculate_dihedral_from_atoms (C++ function) gemmi::calculate_dssp (C++ function) gemmi::calculate_fractional_box (C++ function) gemmi::calculate_hkl_complex_correlation (C++ function) gemmi::calculate_hkl_value_correlation (C++ function) gemmi::calculate_isosurface (C++ function) gemmi::calculate_mass (C++ function), [1] gemmi::calculate_omega (C++ function) gemmi::calculate_phi_psi (C++ function) gemmi::calculate_rmsd_of_superposed_positions (C++ function) gemmi::calculate_sequence_weight (C++ function) gemmi::calculate_sf_part (C++ function) gemmi::calculate_superposition (C++ function) gemmi::calculate_superpositions_in_moving_window (C++ function) gemmi::calculate_u_from_tls (C++ function) gemmi::cat (C++ function) gemmi::cat_to (C++ function), [1] gemmi::Ccp4 (C++ struct) gemmi::Ccp4::full_cell (C++ function) gemmi::Ccp4::grid (C++ member) gemmi::Ccp4::mode_for_data (C++ function) gemmi::Ccp4::read_ccp4 (C++ function) gemmi::Ccp4::read_ccp4_file (C++ function) gemmi::Ccp4::read_ccp4_from_memory (C++ function) gemmi::Ccp4::read_ccp4_header (C++ function) gemmi::Ccp4::read_ccp4_stream (C++ function) gemmi::Ccp4::set_extent (C++ function) gemmi::Ccp4::setup (C++ function) gemmi::Ccp4::update_ccp4_header (C++ function) gemmi::Ccp4::write_ccp4_map (C++ function) gemmi::Ccp4Base (C++ struct) gemmi::Ccp4Base::axis_positions (C++ function) gemmi::Ccp4Base::ccp4_header (C++ member) gemmi::Ccp4Base::full_cell_ (C++ function) gemmi::Ccp4Base::get_extent (C++ function) gemmi::Ccp4Base::get_origin (C++ function) gemmi::Ccp4Base::get_skew_transformation (C++ function) gemmi::Ccp4Base::has_skew_transformation (C++ function) gemmi::Ccp4Base::header_3i32 (C++ function) gemmi::Ccp4Base::header_float (C++ function) gemmi::Ccp4Base::header_i32 (C++ function) gemmi::Ccp4Base::header_rfloat (C++ function) gemmi::Ccp4Base::header_str (C++ function) gemmi::Ccp4Base::header_word (C++ function), [1] gemmi::Ccp4Base::hstats (C++ member) gemmi::Ccp4Base::prepare_ccp4_header_except_mode_and_stats (C++ function) gemmi::Ccp4Base::read_ccp4_header_ (C++ function) gemmi::Ccp4Base::same_byte_order (C++ member) gemmi::Ccp4Base::set_header_3i32 (C++ function) gemmi::Ccp4Base::set_header_float (C++ function) gemmi::Ccp4Base::set_header_i32 (C++ function) gemmi::Ccp4Base::set_header_str (C++ function) gemmi::Ccp4Base::update_header_mode_and_stats (C++ function) gemmi::cctbx_vdw_radius (C++ function) gemmi::ce_almost_eq (C++ function) gemmi::CenterOfMass (C++ struct) gemmi::CenterOfMass::get (C++ function) gemmi::CenterOfMass::mass (C++ member) gemmi::CenterOfMass::weighted_sum (C++ member) gemmi::centred_to_primitive (C++ function) gemmi::centring_vectors (C++ function) gemmi::Chain (C++ struct), [1] gemmi::Chain::append_residues (C++ function), [1] gemmi::Chain::Chain (C++ function), [1], [2], [3] gemmi::Chain::child_type (C++ type), [1] gemmi::Chain::children (C++ function), [1], [2], [3] gemmi::Chain::empty_copy (C++ function), [1] gemmi::Chain::find_or_add_residue (C++ function), [1] gemmi::Chain::find_residue (C++ function), [1], [2], [3] gemmi::Chain::find_residue_group (C++ function), [1], [2], [3] gemmi::Chain::first_conformer (C++ function), [1], [2], [3] gemmi::Chain::get_ligands (C++ function), [1], [2], [3] gemmi::Chain::get_polymer (C++ function), [1], [2], [3] gemmi::Chain::get_residue_span (C++ function), [1], [2], [3] gemmi::Chain::get_subchain (C++ function), [1], [2], [3] gemmi::Chain::get_waters (C++ function), [1], [2], [3] gemmi::Chain::is_first_in_group (C++ function), [1] gemmi::Chain::name (C++ member), [1] gemmi::Chain::next_residue (C++ function), [1] gemmi::Chain::previous_residue (C++ function), [1] gemmi::Chain::residues (C++ member), [1] gemmi::Chain::subchains (C++ function), [1], [2], [3] gemmi::Chain::what (C++ function), [1] gemmi::Chain::whole (C++ function), [1], [2], [3] gemmi::ChainNameGenerator (C++ struct) gemmi::ChainNameGenerator::ChainNameGenerator (C++ function), [1] gemmi::ChainNameGenerator::how (C++ member) gemmi::ChainNameGenerator::make_name_with_numeric_postfix (C++ function) gemmi::ChainNameGenerator::make_new_name (C++ function) gemmi::ChainNameGenerator::make_short_name (C++ function) gemmi::ChainNameGenerator::try_add (C++ function) gemmi::ChainNameGenerator::used_names (C++ member) gemmi::CharArray (C++ class) gemmi::CharArray::CharArray (C++ function), [1] gemmi::CharArray::data (C++ function), [1] gemmi::CharArray::operator bool (C++ function) gemmi::CharArray::ptr_ (C++ member) gemmi::CharArray::resize (C++ function) gemmi::CharArray::roll (C++ function) gemmi::CharArray::set_size (C++ function) gemmi::CharArray::size (C++ function) gemmi::CharArray::size_ (C++ member) gemmi::check_chemcomp_block_number (C++ function) gemmi::check_cif_syntax_gz (C++ function) gemmi::check_data_type_under_symmetry (C++ function) gemmi::check_grid_factors (C++ function), [1] gemmi::check_polymer_type (C++ function) gemmi::ChemComp (C++ struct) gemmi::ChemComp::aliases (C++ member) gemmi::ChemComp::Aliasing (C++ struct) gemmi::ChemComp::Aliasing::group (C++ member) gemmi::ChemComp::Aliasing::name_from_alias (C++ function) gemmi::ChemComp::Aliasing::related (C++ member) gemmi::ChemComp::Atom (C++ struct) gemmi::ChemComp::Atom::acedrg_type (C++ member) gemmi::ChemComp::Atom::charge (C++ member) gemmi::ChemComp::Atom::chem_type (C++ member) gemmi::ChemComp::Atom::el (C++ member) gemmi::ChemComp::Atom::id (C++ member) gemmi::ChemComp::Atom::is_hydrogen (C++ function) gemmi::ChemComp::Atom::old_id (C++ member) gemmi::ChemComp::Atom::xyz (C++ member) gemmi::ChemComp::atoms (C++ member) gemmi::ChemComp::find_atom (C++ function), [1] gemmi::ChemComp::find_atom_by_old_name (C++ function), [1] gemmi::ChemComp::find_atom_index (C++ function) gemmi::ChemComp::get_aliasing (C++ function) gemmi::ChemComp::get_atom (C++ function) gemmi::ChemComp::get_atom_index (C++ function) gemmi::ChemComp::Group (C++ enum) gemmi::ChemComp::group (C++ member) gemmi::ChemComp::Group::Dna (C++ enumerator) gemmi::ChemComp::Group::DnaRna (C++ enumerator) gemmi::ChemComp::Group::Furanose (C++ enumerator) gemmi::ChemComp::Group::Ketopyranose (C++ enumerator) gemmi::ChemComp::Group::MPeptide (C++ enumerator) gemmi::ChemComp::Group::NonPolymer (C++ enumerator) gemmi::ChemComp::Group::Null (C++ enumerator) gemmi::ChemComp::Group::Peptide (C++ enumerator) gemmi::ChemComp::Group::PPeptide (C++ enumerator) gemmi::ChemComp::Group::Pyranose (C++ enumerator) gemmi::ChemComp::Group::Rna (C++ enumerator) gemmi::ChemComp::group_str (C++ function) gemmi::ChemComp::has_atom (C++ function) gemmi::ChemComp::has_coordinates (C++ member) gemmi::ChemComp::has_old_names (C++ function) gemmi::ChemComp::is_nucleotide_group (C++ function) gemmi::ChemComp::is_peptide_group (C++ function) gemmi::ChemComp::make_atom_index (C++ function) gemmi::ChemComp::name (C++ member) gemmi::ChemComp::read_group (C++ function) gemmi::ChemComp::remove_hydrogens (C++ function) gemmi::ChemComp::remove_nonmatching_restraints (C++ function) gemmi::ChemComp::rt (C++ member) gemmi::ChemComp::set_group (C++ function) gemmi::ChemComp::type_or_group (C++ member) gemmi::ChemCompModel (C++ enum) gemmi::ChemCompModel::Example (C++ enumerator) gemmi::ChemCompModel::First (C++ enumerator) gemmi::ChemCompModel::Ideal (C++ enumerator) gemmi::ChemCompModel::Xyz (C++ enumerator) gemmi::ChemLink (C++ struct) gemmi::ChemLink::block (C++ member) gemmi::ChemLink::calculate_score (C++ function) gemmi::ChemLink::id (C++ member) gemmi::ChemLink::name (C++ member) gemmi::ChemLink::rt (C++ member) gemmi::ChemLink::Side (C++ struct) gemmi::ChemLink::side1 (C++ member) gemmi::ChemLink::side2 (C++ member) gemmi::ChemLink::Side::comp (C++ member) gemmi::ChemLink::Side::group (C++ member) gemmi::ChemLink::Side::Group (C++ type) gemmi::ChemLink::Side::matches_group (C++ function) gemmi::ChemLink::Side::mod (C++ member) gemmi::ChemLink::Side::specificity (C++ function) gemmi::ChemMod (C++ struct) gemmi::ChemMod::apply_to (C++ function) gemmi::ChemMod::atom_mods (C++ member) gemmi::ChemMod::AtomMod (C++ struct) gemmi::ChemMod::AtomMod::charge (C++ member) gemmi::ChemMod::AtomMod::chem_type (C++ member) gemmi::ChemMod::AtomMod::el (C++ member) gemmi::ChemMod::AtomMod::func (C++ member) gemmi::ChemMod::AtomMod::new_id (C++ member) gemmi::ChemMod::AtomMod::old_id (C++ member) gemmi::ChemMod::block (C++ member) gemmi::ChemMod::comp_id (C++ member) gemmi::ChemMod::group_id (C++ member) gemmi::ChemMod::id (C++ member) gemmi::ChemMod::name (C++ member) gemmi::ChemMod::rt (C++ member) gemmi::chiral_abs_volume (C++ function) gemmi::chirality_from_flag_and_volume (C++ function) gemmi::chirality_from_string (C++ function) gemmi::chirality_to_string (C++ function) gemmi::ChiralityType (C++ enum) gemmi::ChiralityType::Both (C++ enumerator) gemmi::ChiralityType::Negative (C++ enumerator) gemmi::ChiralityType::Positive (C++ enumerator) gemmi::cif (C++ type), [1], [2], [3], [4], [5], [6], [7], [8], [9] gemmi::cif::Action (C++ struct) gemmi::cif::Action<rules::datablockname> (C++ struct) gemmi::cif::Action<rules::datablockname>::apply (C++ function) gemmi::cif::Action<rules::endframe> (C++ struct) gemmi::cif::Action<rules::endframe>::apply (C++ function) gemmi::cif::Action<rules::framename> (C++ struct) gemmi::cif::Action<rules::framename>::apply (C++ function) gemmi::cif::Action<rules::item_tag> (C++ struct) gemmi::cif::Action<rules::item_tag>::apply (C++ function) gemmi::cif::Action<rules::item_value> (C++ struct) gemmi::cif::Action<rules::item_value>::apply (C++ function) gemmi::cif::Action<rules::loop> (C++ struct) gemmi::cif::Action<rules::loop>::apply (C++ function) gemmi::cif::Action<rules::loop_tag> (C++ struct) gemmi::cif::Action<rules::loop_tag>::apply (C++ function) gemmi::cif::Action<rules::loop_value> (C++ struct) gemmi::cif::Action<rules::loop_value>::apply (C++ function) gemmi::cif::Action<rules::str_global> (C++ struct) gemmi::cif::Action<rules::str_global>::apply (C++ function) gemmi::cif::Action<rules::str_loop> (C++ struct) gemmi::cif::Action<rules::str_loop>::apply (C++ function) gemmi::cif::as_any (C++ function), [1], [2], [3] gemmi::cif::as_char (C++ function) gemmi::cif::as_int (C++ function), [1] gemmi::cif::as_number (C++ function) gemmi::cif::as_string (C++ function), [1] gemmi::cif::assert_tag (C++ function) gemmi::cif::Block (C++ struct) gemmi::cif::Block::Block (C++ function), [1] gemmi::cif::Block::find (C++ function), [1] gemmi::cif::Block::find_any (C++ function) gemmi::cif::Block::find_frame (C++ function) gemmi::cif::Block::find_loop (C++ function) gemmi::cif::Block::find_loop_item (C++ function) gemmi::cif::Block::find_mmcif_category (C++ function) gemmi::cif::Block::find_or_add (C++ function) gemmi::cif::Block::find_pair (C++ function) gemmi::cif::Block::find_pair_item (C++ function) gemmi::cif::Block::find_value (C++ function) gemmi::cif::Block::find_values (C++ function) gemmi::cif::Block::get_index (C++ function) gemmi::cif::Block::get_mmcif_category_names (C++ function) gemmi::cif::Block::has_any_value (C++ function) gemmi::cif::Block::has_mmcif_category (C++ function) gemmi::cif::Block::has_tag (C++ function) gemmi::cif::Block::init_loop (C++ function) gemmi::cif::Block::init_mmcif_loop (C++ function) gemmi::cif::Block::item_as_table (C++ function) gemmi::cif::Block::items (C++ member) gemmi::cif::Block::move_item (C++ function) gemmi::cif::Block::name (C++ member) gemmi::cif::Block::set_pair (C++ function) gemmi::cif::Block::setup_loop (C++ function) gemmi::cif::Block::setup_loop_item (C++ function) gemmi::cif::Block::swap (C++ function) gemmi::cif::BufOstream (C++ class) gemmi::cif::BufOstream::buf (C++ member) gemmi::cif::BufOstream::BufOstream (C++ function) gemmi::cif::BufOstream::flush (C++ function) gemmi::cif::BufOstream::operator<< (C++ function) gemmi::cif::BufOstream::os (C++ member) gemmi::cif::BufOstream::pad (C++ function) gemmi::cif::BufOstream::ptr (C++ member) gemmi::cif::BufOstream::put (C++ function) gemmi::cif::BufOstream::write (C++ function) gemmi::cif::BufOstream::~BufOstream (C++ function) gemmi::cif::char_table (C++ function) gemmi::cif::check_empty_loops (C++ function) gemmi::cif::check_for_duplicates (C++ function) gemmi::cif::check_for_missing_values (C++ function) gemmi::cif::check_for_missing_values_in_block (C++ function) gemmi::cif::check_syntax (C++ function) gemmi::cif::CheckAction (C++ struct) gemmi::cif::CheckAction<rules::missing_value> (C++ struct) gemmi::cif::CheckAction<rules::missing_value>::apply (C++ function) gemmi::cif::cif_fail (C++ function) gemmi::cif::Column (C++ class) gemmi::cif::Column::at (C++ function), [1] gemmi::cif::Column::begin (C++ function), [1] gemmi::cif::Column::col (C++ function) gemmi::cif::Column::col_ (C++ member) gemmi::cif::Column::Column (C++ function), [1] gemmi::cif::Column::const_iterator (C++ type) gemmi::cif::Column::end (C++ function), [1] gemmi::cif::Column::erase (C++ function) gemmi::cif::Column::get_loop (C++ function) gemmi::cif::Column::get_tag (C++ function), [1] gemmi::cif::Column::item (C++ function), [1] gemmi::cif::Column::item_ (C++ member) gemmi::cif::Column::iterator (C++ type) gemmi::cif::Column::length (C++ function) gemmi::cif::Column::operator bool (C++ function) gemmi::cif::Column::operator[] (C++ function) gemmi::cif::Column::str (C++ function) gemmi::cif::CommentArg (C++ struct) gemmi::cif::CommentArg::str (C++ member) gemmi::cif::Ddl (C++ struct) gemmi::cif::Ddl::check_audit_conform (C++ function) gemmi::cif::Ddl::check_mandatory_items (C++ function) gemmi::cif::Ddl::check_parent_link (C++ function) gemmi::cif::Ddl::check_parents (C++ function) gemmi::cif::Ddl::check_unique_keys_in_loop (C++ function) gemmi::cif::Ddl::Ddl (C++ function), [1] gemmi::cif::Ddl::ddl_docs_ (C++ member) gemmi::cif::Ddl::dict_name (C++ member) gemmi::cif::Ddl::dict_version (C++ member) gemmi::cif::Ddl::find_rules (C++ function) gemmi::cif::Ddl::item_parents_ (C++ member) gemmi::cif::Ddl::logger (C++ member) gemmi::cif::Ddl::major_version (C++ member) gemmi::cif::Ddl::name_index_ (C++ member) gemmi::cif::Ddl::operator= (C++ function) gemmi::cif::Ddl::ParentLink (C++ struct) gemmi::cif::Ddl::ParentLink::child_tags (C++ member) gemmi::cif::Ddl::ParentLink::group (C++ member) gemmi::cif::Ddl::ParentLink::parent_tags (C++ member) gemmi::cif::Ddl::parents_ (C++ member) gemmi::cif::Ddl::print_unknown_tags (C++ member) gemmi::cif::Ddl::read_ddl (C++ function) gemmi::cif::Ddl::read_ddl1_block (C++ function) gemmi::cif::Ddl::read_ddl2_block (C++ function) gemmi::cif::Ddl::regexes (C++ function) gemmi::cif::Ddl::regexes_ (C++ member) gemmi::cif::Ddl::use_context (C++ member) gemmi::cif::Ddl::use_deposition_checks (C++ member) gemmi::cif::Ddl::use_mandatory (C++ member) gemmi::cif::Ddl::use_parents (C++ member) gemmi::cif::Ddl::use_regex (C++ member) gemmi::cif::Ddl::use_unique_keys (C++ member) gemmi::cif::Ddl::validate_block (C++ function) gemmi::cif::Ddl::validate_cif (C++ function) gemmi::cif::Ddl::warn (C++ function) gemmi::cif::Document (C++ struct) gemmi::cif::Document::add_new_block (C++ function) gemmi::cif::Document::blocks (C++ member) gemmi::cif::Document::clear (C++ function) gemmi::cif::Document::find_block (C++ function), [1] gemmi::cif::Document::items_ (C++ member) gemmi::cif::Document::sole_block (C++ function), [1] gemmi::cif::Document::source (C++ member) gemmi::cif::ensure_mmcif_category (C++ function) gemmi::cif::error_message (C++ function) gemmi::cif::FrameArg (C++ struct) gemmi::cif::FrameArg::str (C++ member) gemmi::cif::is_null (C++ function) gemmi::cif::is_numb (C++ function) gemmi::cif::is_text_field (C++ function) gemmi::cif::Item (C++ struct) gemmi::cif::Item::copy_value (C++ function) gemmi::cif::Item::destruct (C++ function) gemmi::cif::Item::erase (C++ function) gemmi::cif::Item::frame (C++ member) gemmi::cif::Item::has_prefix (C++ function) gemmi::cif::Item::Item (C++ function), [1], [2], [3], [4], [5], [6], [7] gemmi::cif::Item::line_number (C++ member) gemmi::cif::Item::loop (C++ member) gemmi::cif::Item::move_value (C++ function) gemmi::cif::Item::operator= (C++ function) gemmi::cif::Item::pair (C++ member) gemmi::cif::Item::set_value (C++ function) gemmi::cif::Item::type (C++ member) gemmi::cif::Item::~Item (C++ function) gemmi::cif::ItemSpan (C++ struct) gemmi::cif::ItemSpan::begin_ (C++ member) gemmi::cif::ItemSpan::end_ (C++ member) gemmi::cif::ItemSpan::items_ (C++ member) gemmi::cif::ItemSpan::ItemSpan (C++ function), [1] gemmi::cif::ItemSpan::set_pair (C++ function) gemmi::cif::ItemType (C++ enum) gemmi::cif::ItemType::Comment (C++ enumerator) gemmi::cif::ItemType::Erased (C++ enumerator) gemmi::cif::ItemType::Frame (C++ enumerator) gemmi::cif::ItemType::Loop (C++ enumerator) gemmi::cif::ItemType::Pair (C++ enumerator) gemmi::cif::JsonWriteOptions (C++ struct) gemmi::cif::JsonWriteOptions::as_comcifs (C++ member) gemmi::cif::JsonWriteOptions::bare_tags (C++ member) gemmi::cif::JsonWriteOptions::cif_dot (C++ member) gemmi::cif::JsonWriteOptions::comcifs (C++ function) gemmi::cif::JsonWriteOptions::group_ddl2_categories (C++ member) gemmi::cif::JsonWriteOptions::lowercase_names (C++ member) gemmi::cif::JsonWriteOptions::mmjson (C++ function) gemmi::cif::JsonWriteOptions::quote_numbers (C++ member) gemmi::cif::JsonWriteOptions::values_as_arrays (C++ member) gemmi::cif::JsonWriteOptions::with_data_keyword (C++ member) gemmi::cif::Loop (C++ struct) gemmi::cif::Loop::add_columns (C++ function) gemmi::cif::Loop::add_comment_and_row (C++ function) gemmi::cif::Loop::add_row (C++ function), [1] gemmi::cif::Loop::add_values (C++ function), [1] gemmi::cif::Loop::clear (C++ function) gemmi::cif::Loop::common_prefix (C++ function) gemmi::cif::Loop::find_tag (C++ function) gemmi::cif::Loop::find_tag_lc (C++ function) gemmi::cif::Loop::has_tag (C++ function) gemmi::cif::Loop::length (C++ function) gemmi::cif::Loop::move_row (C++ function) gemmi::cif::Loop::pop_row (C++ function) gemmi::cif::Loop::remove_column (C++ function) gemmi::cif::Loop::remove_column_at (C++ function) gemmi::cif::Loop::set_all_values (C++ function) gemmi::cif::Loop::tags (C++ member) gemmi::cif::Loop::val (C++ function), [1] gemmi::cif::Loop::values (C++ member) gemmi::cif::Loop::width (C++ function) gemmi::cif::LoopArg (C++ struct) gemmi::cif::Pair (C++ type) gemmi::cif::parse_input (C++ function) gemmi::cif::parse_one_block (C++ function) gemmi::cif::quote (C++ function) gemmi::cif::read (C++ function) gemmi::cif::read_cstream (C++ function) gemmi::cif::read_file (C++ function) gemmi::cif::read_input (C++ function) gemmi::cif::read_istream (C++ function) gemmi::cif::read_memory (C++ function) gemmi::cif::read_mmjson (C++ function) gemmi::cif::read_mmjson_file (C++ function) gemmi::cif::read_mmjson_insitu (C++ function) gemmi::cif::read_one_block (C++ function) gemmi::cif::read_string (C++ function) gemmi::cif::rules (C++ type) gemmi::cif::rules::anyprint_ch (C++ struct) gemmi::cif::rules::comment (C++ struct) gemmi::cif::rules::content (C++ struct) gemmi::cif::rules::datablock (C++ struct) gemmi::cif::rules::datablockheading (C++ struct) gemmi::cif::rules::datablockname (C++ struct) gemmi::cif::rules::dataitem (C++ struct) gemmi::cif::rules::doublequoted (C++ struct) gemmi::cif::rules::endframe (C++ struct) gemmi::cif::rules::endq (C++ struct) gemmi::cif::rules::field_sep (C++ struct) gemmi::cif::rules::file (C++ struct) gemmi::cif::rules::frame (C++ struct) gemmi::cif::rules::framename (C++ struct) gemmi::cif::rules::item_tag (C++ struct) gemmi::cif::rules::item_value (C++ struct) gemmi::cif::rules::keyword (C++ struct) gemmi::cif::rules::lookup_char (C++ struct) gemmi::cif::rules::lookup_char::analyze_t (C++ type) gemmi::cif::rules::lookup_char::match (C++ function) gemmi::cif::rules::loop (C++ struct) gemmi::cif::rules::loop_end (C++ struct) gemmi::cif::rules::loop_tag (C++ struct) gemmi::cif::rules::loop_value (C++ struct) gemmi::cif::rules::missing_value (C++ struct) gemmi::cif::rules::nonblank_ch (C++ struct) gemmi::cif::rules::one_block (C++ struct) gemmi::cif::rules::ordinary_char (C++ type) gemmi::cif::rules::quoted (C++ struct) gemmi::cif::rules::quoted_tail (C++ struct) gemmi::cif::rules::simunq (C++ struct) gemmi::cif::rules::str_data (C++ struct) gemmi::cif::rules::str_global (C++ struct) gemmi::cif::rules::str_loop (C++ struct) gemmi::cif::rules::str_save (C++ struct) gemmi::cif::rules::str_stop (C++ struct) gemmi::cif::rules::tag (C++ struct) gemmi::cif::rules::textfield (C++ struct) gemmi::cif::rules::unquoted (C++ struct) gemmi::cif::rules::value (C++ struct) gemmi::cif::rules::whitespace (C++ struct) gemmi::cif::rules::ws_char (C++ type) gemmi::cif::rules::ws_or_eof (C++ struct) gemmi::cif::should_be_separated_ (C++ function) gemmi::cif::Style (C++ enum) gemmi::cif::Style::Aligned (C++ enumerator) gemmi::cif::Style::Indent35 (C++ enumerator) gemmi::cif::Style::NoBlankLines (C++ enumerator) gemmi::cif::Style::Pdbx (C++ enumerator) gemmi::cif::Style::PreferPairs (C++ enumerator) gemmi::cif::Style::Simple (C++ enumerator) gemmi::cif::Table (C++ struct) gemmi::cif::Table::append_row (C++ function), [1] gemmi::cif::Table::at (C++ function) gemmi::cif::Table::at_check (C++ function) gemmi::cif::Table::begin (C++ function) gemmi::cif::Table::bloc (C++ member) gemmi::cif::Table::column (C++ function) gemmi::cif::Table::column_at_pos (C++ function) gemmi::cif::Table::end (C++ function) gemmi::cif::Table::ensure_loop (C++ function) gemmi::cif::Table::erase (C++ function) gemmi::cif::Table::find_column (C++ function) gemmi::cif::Table::find_column_position (C++ function) gemmi::cif::Table::find_row (C++ function) gemmi::cif::Table::get_loop (C++ function) gemmi::cif::Table::get_prefix (C++ function) gemmi::cif::Table::has_column (C++ function) gemmi::cif::Table::iterator (C++ struct) gemmi::cif::Table::iterator::get (C++ function) gemmi::cif::Table::iterator::index (C++ member) gemmi::cif::Table::iterator::operator!= (C++ function) gemmi::cif::Table::iterator::operator* (C++ function) gemmi::cif::Table::iterator::operator++ (C++ function) gemmi::cif::Table::iterator::operator== (C++ function) gemmi::cif::Table::iterator::parent (C++ member) gemmi::cif::Table::length (C++ function) gemmi::cif::Table::loop_item (C++ member) gemmi::cif::Table::move_row (C++ function) gemmi::cif::Table::ok (C++ function) gemmi::cif::Table::one (C++ function) gemmi::cif::Table::operator[] (C++ function) gemmi::cif::Table::positions (C++ member) gemmi::cif::Table::prefix_length (C++ member) gemmi::cif::Table::remove_row (C++ function) gemmi::cif::Table::remove_rows (C++ function) gemmi::cif::Table::Row (C++ struct) gemmi::cif::Table::Row::at (C++ function), [1] gemmi::cif::Table::Row::begin (C++ function), [1] gemmi::cif::Table::Row::const_iterator (C++ type) gemmi::cif::Table::Row::end (C++ function), [1] gemmi::cif::Table::Row::has (C++ function) gemmi::cif::Table::Row::has2 (C++ function) gemmi::cif::Table::Row::iterator (C++ type) gemmi::cif::Table::Row::one_of (C++ function) gemmi::cif::Table::Row::operator[] (C++ function), [1] gemmi::cif::Table::Row::ptr_at (C++ function), [1] gemmi::cif::Table::Row::row_index (C++ member) gemmi::cif::Table::Row::size (C++ function) gemmi::cif::Table::Row::str (C++ function) gemmi::cif::Table::Row::tab (C++ member) gemmi::cif::Table::Row::value_at (C++ function), [1] gemmi::cif::Table::Row::value_at_unsafe (C++ function) gemmi::cif::Table::size (C++ function) gemmi::cif::Table::tags (C++ function) gemmi::cif::Table::width (C++ function) gemmi::cif::try_parse (C++ function) gemmi::cif::write_cif_block_to_stream (C++ function) gemmi::cif::write_cif_to_stream (C++ function) gemmi::cif::write_json_to_stream (C++ function) gemmi::cif::write_mmjson_to_stream (C++ function) gemmi::cif::write_out_item (C++ function) gemmi::cif::write_out_loop (C++ function) gemmi::cif::write_out_pair (C++ function) gemmi::cif::write_text_field (C++ function) gemmi::cif::WriteOptions (C++ struct) gemmi::cif::WriteOptions::align_loops (C++ member) gemmi::cif::WriteOptions::align_pairs (C++ member) gemmi::cif::WriteOptions::compact (C++ member) gemmi::cif::WriteOptions::misuse_hash (C++ member) gemmi::cif::WriteOptions::prefer_pairs (C++ member) gemmi::cif::WriteOptions::str (C++ function) gemmi::cif::WriteOptions::WriteOptions (C++ function), [1] gemmi::CifToMtz (C++ struct) gemmi::CifToMtz::auto_convert_block_to_mtz (C++ function) gemmi::CifToMtz::convert_block_to_mtz (C++ function) gemmi::CifToMtz::default_spec (C++ function) gemmi::CifToMtz::Entry (C++ struct) gemmi::CifToMtz::Entry::code_to_number (C++ member) gemmi::CifToMtz::Entry::col_label (C++ member) gemmi::CifToMtz::Entry::col_type (C++ member) gemmi::CifToMtz::Entry::dataset_id (C++ member) gemmi::CifToMtz::Entry::Entry (C++ function) gemmi::CifToMtz::Entry::refln_tag (C++ member) gemmi::CifToMtz::Entry::translate_code_to_number (C++ function) gemmi::CifToMtz::force_unmerged (C++ member) gemmi::CifToMtz::spec_lines (C++ member) gemmi::CifToMtz::status_to_freeflag (C++ function) gemmi::CifToMtz::title (C++ member) gemmi::CifToMtz::wavelength (C++ member) gemmi::CifWalk (C++ type) gemmi::CisPep (C++ struct) gemmi::CisPep::model_num (C++ member) gemmi::CisPep::only_altloc (C++ member) gemmi::CisPep::partner_c (C++ member) gemmi::CisPep::partner_n (C++ member) gemmi::CisPep::reported_angle (C++ member) gemmi::cispep_from_mmdb (C++ function) gemmi::cispep_to_mmdb (C++ function) gemmi::clamp (C++ function) gemmi::clear_label_seq_id (C++ function) gemmi::clear_sequences (C++ function) gemmi::combine_correlations (C++ function) gemmi::combine_two_correlations (C++ function) gemmi::compile_pymol_selection (C++ function) gemmi::ComplexCorrelation (C++ struct) gemmi::ComplexCorrelation::add_point (C++ function), [1] gemmi::ComplexCorrelation::coefficient (C++ function) gemmi::ComplexCorrelation::mean_ratio (C++ function) gemmi::ComplexCorrelation::mean_x (C++ member) gemmi::ComplexCorrelation::mean_y (C++ member) gemmi::ComplexCorrelation::n (C++ member) gemmi::ComplexCorrelation::sum_xx (C++ member) gemmi::ComplexCorrelation::sum_xy (C++ member) gemmi::ComplexCorrelation::sum_yy (C++ member) gemmi::compute_gradients (C++ function) gemmi::compute_lm_matrices (C++ function) gemmi::compute_wssr (C++ function) gemmi::Connection (C++ struct) gemmi::Connection::asu (C++ member) gemmi::Connection::link_id (C++ member) gemmi::Connection::name (C++ member) gemmi::Connection::partner1 (C++ member) gemmi::Connection::partner2 (C++ member) gemmi::Connection::reported_distance (C++ member) gemmi::Connection::reported_sym (C++ member) gemmi::Connection::Type (C++ enum) gemmi::Connection::type (C++ member) gemmi::Connection::Type::Covale (C++ enumerator) gemmi::Connection::Type::Disulf (C++ enumerator) gemmi::Connection::Type::Hydrog (C++ enumerator) gemmi::Connection::Type::MetalC (C++ enumerator) gemmi::Connection::Type::Unknown (C++ enumerator) gemmi::connection_type_from_string (C++ function) gemmi::connection_type_to_string (C++ function) gemmi::const_CRA (C++ struct), [1] gemmi::const_CRA::atom (C++ member), [1] gemmi::const_CRA::chain (C++ member), [1] gemmi::const_CRA::residue (C++ member), [1] gemmi::ConstAtomGroup (C++ type), [1] gemmi::ConstCraProxy (C++ type), [1] gemmi::ConstFilterProxy (C++ struct) gemmi::ConstFilterProxy::begin (C++ function) gemmi::ConstFilterProxy::end (C++ function) gemmi::ConstFilterProxy::filter (C++ member) gemmi::ConstFilterProxy::iterator (C++ type) gemmi::ConstFilterProxy::vec (C++ member) gemmi::ConstResidueGroup (C++ struct), [1] gemmi::ConstResidueGroup::by_resname (C++ function), [1] gemmi::ConstResidueGroup::ConstResidueGroup (C++ function), [1], [2], [3] gemmi::ConstResidueSpan (C++ struct), [1] gemmi::ConstResidueSpan::auth_seq_id_to_label (C++ function), [1] gemmi::ConstResidueSpan::ConstResidueSpan (C++ function), [1] gemmi::ConstResidueSpan::extract_sequence (C++ function), [1] gemmi::ConstResidueSpan::extreme_num (C++ function), [1] gemmi::ConstResidueSpan::find_residue_group (C++ function), [1] gemmi::ConstResidueSpan::first_conformer (C++ function), [1] gemmi::ConstResidueSpan::label_seq_id_to_auth (C++ function), [1] gemmi::ConstResidueSpan::length (C++ function), [1] gemmi::ConstResidueSpan::Parent (C++ type), [1] gemmi::ConstResidueSpan::subchain_id (C++ function), [1] gemmi::ConstUniqProxy (C++ struct) gemmi::ConstUniqProxy::begin (C++ function) gemmi::ConstUniqProxy::end (C++ function) gemmi::ConstUniqProxy::iterator (C++ type) gemmi::ConstUniqProxy::vec (C++ member) gemmi::ContactSearch (C++ struct) gemmi::ContactSearch::ContactSearch (C++ function) gemmi::ContactSearch::find_contacts (C++ function) gemmi::ContactSearch::for_each_contact (C++ function) gemmi::ContactSearch::get_radius (C++ function) gemmi::ContactSearch::Ignore (C++ enum) gemmi::ContactSearch::ignore (C++ member) gemmi::ContactSearch::Ignore::AdjacentResidues (C++ enumerator) gemmi::ContactSearch::Ignore::Nothing (C++ enumerator) gemmi::ContactSearch::Ignore::SameAsu (C++ enumerator) gemmi::ContactSearch::Ignore::SameChain (C++ enumerator) gemmi::ContactSearch::Ignore::SameResidue (C++ enumerator) gemmi::ContactSearch::min_occupancy (C++ member) gemmi::ContactSearch::radii (C++ member) gemmi::ContactSearch::Result (C++ struct) gemmi::ContactSearch::Result::dist_sq (C++ member) gemmi::ContactSearch::Result::image_idx (C++ member) gemmi::ContactSearch::Result::partner1 (C++ member) gemmi::ContactSearch::Result::partner2 (C++ member) gemmi::ContactSearch::search_radius (C++ member) gemmi::ContactSearch::set_radius (C++ function) gemmi::ContactSearch::setup_atomic_radii (C++ function) gemmi::ContactSearch::special_pos_cutoff_sq (C++ member) gemmi::ContactSearch::twice (C++ member) gemmi::coor_format_from_content (C++ function) gemmi::coor_format_from_ext (C++ function) gemmi::coor_format_from_ext_gz (C++ function) gemmi::CoorFileWalk (C++ type) gemmi::CoorFormat (C++ enum), [1] gemmi::CoorFormat::ChemComp (C++ enumerator), [1] gemmi::CoorFormat::Detect (C++ enumerator), [1] gemmi::CoorFormat::Mmcif (C++ enumerator), [1] gemmi::CoorFormat::Mmjson (C++ enumerator), [1] gemmi::CoorFormat::Pdb (C++ enumerator), [1] gemmi::CoorFormat::Unknown (C++ enumerator), [1] gemmi::copy_atom_from_mmdb (C++ function) gemmi::copy_chain_from_mmdb (C++ function) gemmi::copy_from_mmdb (C++ function) gemmi::copy_model_from_mmdb (C++ function) gemmi::copy_residue_from_mmdb (C++ function) gemmi::copy_to_mmdb (C++ function) gemmi::copy_transform_to_mmdb (C++ function) gemmi::Correlation (C++ struct) gemmi::Correlation::add_point (C++ function) gemmi::Correlation::coefficient (C++ function) gemmi::Correlation::covariance (C++ function) gemmi::Correlation::intercept (C++ function) gemmi::Correlation::mean_ratio (C++ function) gemmi::Correlation::mean_x (C++ member) gemmi::Correlation::mean_y (C++ member) gemmi::Correlation::n (C++ member) gemmi::Correlation::slope (C++ function) gemmi::Correlation::sum_xx (C++ member) gemmi::Correlation::sum_xy (C++ member) gemmi::Correlation::sum_yy (C++ member) gemmi::Correlation::x_variance (C++ function) gemmi::Correlation::y_variance (C++ function) gemmi::count_atom_sites (C++ function), [1] gemmi::count_equal_values (C++ function) gemmi::count_occupancies (C++ function), [1] gemmi::count_reflections (C++ function) gemmi::covalent_radius (C++ function) gemmi::Covariance (C++ struct) gemmi::Covariance::add_point (C++ function) gemmi::Covariance::mean_y (C++ member) gemmi::CRA (C++ struct), [1] gemmi::CRA::atom (C++ member), [1] gemmi::CRA::chain (C++ member), [1] gemmi::CRA::operator const_CRA (C++ function), [1] gemmi::CRA::residue (C++ member), [1] gemmi::CraIterPolicy (C++ class), [1] gemmi::CraIterPolicy::chains_end (C++ member), [1] gemmi::CraIterPolicy::const_policy (C++ type), [1] gemmi::CraIterPolicy::cra (C++ member), [1] gemmi::CraIterPolicy::CraIterPolicy (C++ function), [1], [2], [3] gemmi::CraIterPolicy::decrement (C++ function), [1] gemmi::CraIterPolicy::dereference (C++ function), [1] gemmi::CraIterPolicy::equal (C++ function), [1] gemmi::CraIterPolicy::increment (C++ function), [1] gemmi::CraIterPolicy::operator const_policy (C++ function), [1] gemmi::CraIterPolicy::reference (C++ type), [1] gemmi::CraIterPolicy::value_type (C++ type), [1] gemmi::CraProxy (C++ type), [1] gemmi::CraProxy_ (C++ struct), [1] gemmi::CraProxy_::begin (C++ function), [1] gemmi::CraProxy_::chains (C++ member), [1] gemmi::CraProxy_::end (C++ function), [1] gemmi::CraProxy_::iterator (C++ type), [1] gemmi::cromer_liberman (C++ function) gemmi::cromer_liberman_for_array (C++ function) gemmi::crystal_system (C++ function), [1] gemmi::crystal_system_str (C++ function) gemmi::CrystalInfo (C++ struct) gemmi::CrystalInfo::description (C++ member) gemmi::CrystalInfo::diffractions (C++ member) gemmi::CrystalInfo::id (C++ member) gemmi::CrystalInfo::ph (C++ member) gemmi::CrystalInfo::ph_range (C++ member) gemmi::CrystalSystem (C++ enum) gemmi::CrystalSystem::Cubic (C++ enumerator) gemmi::CrystalSystem::Hexagonal (C++ enumerator) gemmi::CrystalSystem::Monoclinic (C++ enumerator) gemmi::CrystalSystem::Orthorhombic (C++ enumerator) gemmi::CrystalSystem::Tetragonal (C++ enumerator) gemmi::CrystalSystem::Triclinic (C++ enumerator) gemmi::CrystalSystem::Trigonal (C++ enumerator) gemmi::cubic_interpolation (C++ function), [1] gemmi::cubic_interpolation_der (C++ function), [1] gemmi::CustomCoef (C++ struct) gemmi::CustomCoef::Coef (C++ type) gemmi::CustomCoef::data (C++ member) gemmi::CustomCoef::get (C++ function) gemmi::data_fits_into (C++ function) gemmi::data_proxy (C++ function), [1] gemmi::DataStats (C++ struct) gemmi::DataStats::dmax (C++ member) gemmi::DataStats::dmean (C++ member) gemmi::DataStats::dmin (C++ member) gemmi::DataStats::nan_count (C++ member) gemmi::DataStats::rms (C++ member) gemmi::DataType (C++ enum) gemmi::DataType::Anomalous (C++ enumerator) gemmi::DataType::Mean (C++ enumerator) gemmi::DataType::MergedAM (C++ enumerator) gemmi::DataType::MergedMA (C++ enumerator) gemmi::DataType::UAM (C++ enumerator) gemmi::DataType::Unknown (C++ enumerator) gemmi::DataType::Unmerged (C++ enumerator) gemmi::deduplicate_entities (C++ function) gemmi::deg (C++ function) gemmi::DensityCalculator (C++ struct) gemmi::DensityCalculator::add_atom_density_to_grid (C++ function) gemmi::DensityCalculator::add_c_contribution_to_grid (C++ function) gemmi::DensityCalculator::add_model_density_to_grid (C++ function) gemmi::DensityCalculator::addends (C++ member) gemmi::DensityCalculator::blur (C++ member) gemmi::DensityCalculator::CReal (C++ type) gemmi::DensityCalculator::cutoff (C++ member) gemmi::DensityCalculator::d_min (C++ member) gemmi::DensityCalculator::do_add_atom_density_to_grid (C++ function) gemmi::DensityCalculator::estimate_radius (C++ function) gemmi::DensityCalculator::grid (C++ member) gemmi::DensityCalculator::initialize_grid (C++ function) gemmi::DensityCalculator::mott_bethe_factor (C++ function) gemmi::DensityCalculator::put_model_density_on_grid (C++ function) gemmi::DensityCalculator::rate (C++ member) gemmi::DensityCalculator::reciprocal_space_multiplier (C++ function) gemmi::DensityCalculator::requested_grid_spacing (C++ function) gemmi::DensityCalculator::set_grid_cell_and_spacegroup (C++ function) gemmi::DensityCalculator::set_refmac_compatible_blur (C++ function) gemmi::determine_cutoff_radius (C++ function) gemmi::DiffractionInfo (C++ struct) gemmi::DiffractionInfo::beamline (C++ member) gemmi::DiffractionInfo::collection_date (C++ member) gemmi::DiffractionInfo::detector (C++ member) gemmi::DiffractionInfo::detector_make (C++ member) gemmi::DiffractionInfo::id (C++ member) gemmi::DiffractionInfo::mono_or_laue (C++ member) gemmi::DiffractionInfo::monochromator (C++ member) gemmi::DiffractionInfo::optics (C++ member) gemmi::DiffractionInfo::scattering_type (C++ member) gemmi::DiffractionInfo::source (C++ member) gemmi::DiffractionInfo::source_type (C++ member) gemmi::DiffractionInfo::synchrotron (C++ member) gemmi::DiffractionInfo::temperature (C++ member) gemmi::DiffractionInfo::wavelengths (C++ member) gemmi::DirWalk (C++ class) gemmi::DirWalk::begin (C++ function) gemmi::DirWalk::dirs_ (C++ member) gemmi::DirWalk::DirWalk (C++ function), [1] gemmi::DirWalk::end (C++ function) gemmi::DirWalk::filter (C++ member) gemmi::DirWalk::is_single_file (C++ function) gemmi::DirWalk::Iter (C++ struct) gemmi::DirWalk::Iter::cur (C++ member) gemmi::DirWalk::Iter::depth (C++ function) gemmi::DirWalk::Iter::get (C++ function) gemmi::DirWalk::Iter::get_dir (C++ function) gemmi::DirWalk::Iter::is_special (C++ function) gemmi::DirWalk::Iter::next (C++ function) gemmi::DirWalk::Iter::operator!= (C++ function) gemmi::DirWalk::Iter::operator* (C++ function) gemmi::DirWalk::Iter::operator++ (C++ function) gemmi::DirWalk::Iter::operator== (C++ function) gemmi::DirWalk::Iter::walk (C++ member) gemmi::DirWalk::pop_dir (C++ function) gemmi::DirWalk::push_dir (C++ function) gemmi::DirWalk::top_ (C++ member) gemmi::DirWalk::~DirWalk (C++ function) gemmi::discard_by_sigma_ratio (C++ function) gemmi::distinct_altlocs (C++ function) gemmi::DsspCalculator (C++ struct) gemmi::DsspCalculator::bridges_ (C++ member) gemmi::DsspCalculator::calculate_bridge_type (C++ function) gemmi::DsspCalculator::calculate_hbond_energy (C++ function) gemmi::DsspCalculator::calculate_hbond_geometry (C++ function) gemmi::DsspCalculator::calculate_hydrogen_bonds (C++ function) gemmi::DsspCalculator::calculate_secondary_structure (C++ function) gemmi::DsspCalculator::DsspCalculator (C++ function) gemmi::DsspCalculator::get_detailed_info (C++ function) gemmi::DsspCalculator::has_hbond_between (C++ function) gemmi::DsspCalculator::no_chain_breaks_between (C++ function) gemmi::DsspCalculator::options (C++ member) gemmi::DsspCalculator::ss_info (C++ member) gemmi::DsspOptions (C++ struct) gemmi::DsspOptions::bend_angle_min (C++ member) gemmi::DsspOptions::cutoff (C++ member) gemmi::DsspOptions::hbond_definition (C++ member) gemmi::DsspOptions::hbond_energy_cutoff (C++ member) gemmi::DsspOptions::hydrogen_mode (C++ member) gemmi::DsspOptions::max_peptide_bond_distance (C++ member) gemmi::DsspOptions::min_ca_distance (C++ member) gemmi::DsspOptions::pi_helix_preference (C++ member) gemmi::DsspOptions::search_polyproline (C++ member) gemmi::DsspOptions::shortened_pp_stretch (C++ member) gemmi::El (C++ enum) gemmi::El::Ac (C++ enumerator) gemmi::El::Ag (C++ enumerator) gemmi::El::Al (C++ enumerator) gemmi::El::Am (C++ enumerator) gemmi::El::Ar (C++ enumerator) gemmi::El::As (C++ enumerator) gemmi::El::At (C++ enumerator) gemmi::El::Au (C++ enumerator) gemmi::El::B (C++ enumerator) gemmi::El::Ba (C++ enumerator) gemmi::El::Be (C++ enumerator) gemmi::El::Bh (C++ enumerator) gemmi::El::Bi (C++ enumerator) gemmi::El::Bk (C++ enumerator) gemmi::El::Br (C++ enumerator) gemmi::El::C (C++ enumerator) gemmi::El::Ca (C++ enumerator) gemmi::El::Cd (C++ enumerator) gemmi::El::Ce (C++ enumerator) gemmi::El::Cf (C++ enumerator) gemmi::El::Cl (C++ enumerator) gemmi::El::Cm (C++ enumerator) gemmi::El::Cn (C++ enumerator) gemmi::El::Co (C++ enumerator) gemmi::El::Cr (C++ enumerator) gemmi::El::Cs (C++ enumerator) gemmi::El::Cu (C++ enumerator) gemmi::El::D (C++ enumerator) gemmi::El::Db (C++ enumerator) gemmi::El::Ds (C++ enumerator) gemmi::El::Dy (C++ enumerator) gemmi::El::END (C++ enumerator) gemmi::El::Er (C++ enumerator) gemmi::El::Es (C++ enumerator) gemmi::El::Eu (C++ enumerator) gemmi::El::F (C++ enumerator) gemmi::El::Fe (C++ enumerator) gemmi::El::Fl (C++ enumerator) gemmi::El::Fm (C++ enumerator) gemmi::El::Fr (C++ enumerator) gemmi::El::Ga (C++ enumerator) gemmi::El::Gd (C++ enumerator) gemmi::El::Ge (C++ enumerator) gemmi::El::H (C++ enumerator) gemmi::El::He (C++ enumerator) gemmi::El::Hf (C++ enumerator) gemmi::El::Hg (C++ enumerator) gemmi::El::Ho (C++ enumerator) gemmi::El::Hs (C++ enumerator) gemmi::El::I (C++ enumerator) gemmi::El::In (C++ enumerator) gemmi::El::Ir (C++ enumerator) gemmi::El::K (C++ enumerator) gemmi::El::Kr (C++ enumerator) gemmi::El::La (C++ enumerator) gemmi::El::Li (C++ enumerator) gemmi::El::Lr (C++ enumerator) gemmi::El::Lu (C++ enumerator) gemmi::El::Lv (C++ enumerator) gemmi::El::Mc (C++ enumerator) gemmi::El::Md (C++ enumerator) gemmi::El::Mg (C++ enumerator) gemmi::El::Mn (C++ enumerator) gemmi::El::Mo (C++ enumerator) gemmi::El::Mt (C++ enumerator) gemmi::El::N (C++ enumerator) gemmi::El::Na (C++ enumerator) gemmi::El::Nb (C++ enumerator) gemmi::El::Nd (C++ enumerator) gemmi::El::Ne (C++ enumerator) gemmi::El::Nh (C++ enumerator) gemmi::El::Ni (C++ enumerator) gemmi::El::No (C++ enumerator) gemmi::El::Np (C++ enumerator) gemmi::El::O (C++ enumerator) gemmi::El::Og (C++ enumerator) gemmi::El::Os (C++ enumerator) gemmi::El::P (C++ enumerator) gemmi::El::Pa (C++ enumerator) gemmi::El::Pb (C++ enumerator) gemmi::El::Pd (C++ enumerator) gemmi::El::Pm (C++ enumerator) gemmi::El::Po (C++ enumerator) gemmi::El::Pr (C++ enumerator) gemmi::El::Pt (C++ enumerator) gemmi::El::Pu (C++ enumerator) gemmi::El::Ra (C++ enumerator) gemmi::El::Rb (C++ enumerator) gemmi::El::Re (C++ enumerator) gemmi::El::Rf (C++ enumerator) gemmi::El::Rg (C++ enumerator) gemmi::El::Rh (C++ enumerator) gemmi::El::Rn (C++ enumerator) gemmi::El::Ru (C++ enumerator) gemmi::El::S (C++ enumerator) gemmi::El::Sb (C++ enumerator) gemmi::El::Sc (C++ enumerator) gemmi::El::Se (C++ enumerator) gemmi::El::Sg (C++ enumerator) gemmi::El::Si (C++ enumerator) gemmi::El::Sm (C++ enumerator) gemmi::El::Sn (C++ enumerator) gemmi::El::Sr (C++ enumerator) gemmi::El::Ta (C++ enumerator) gemmi::El::Tb (C++ enumerator) gemmi::El::Tc (C++ enumerator) gemmi::El::Te (C++ enumerator) gemmi::El::Th (C++ enumerator) gemmi::El::Ti (C++ enumerator) gemmi::El::Tl (C++ enumerator) gemmi::El::Tm (C++ enumerator) gemmi::El::Ts (C++ enumerator) gemmi::El::U (C++ enumerator) gemmi::El::V (C++ enumerator) gemmi::El::W (C++ enumerator) gemmi::El::X (C++ enumerator) gemmi::El::Xe (C++ enumerator) gemmi::El::Y (C++ enumerator) gemmi::El::Yb (C++ enumerator) gemmi::El::Zn (C++ enumerator) gemmi::El::Zr (C++ enumerator) gemmi::Element (C++ struct) gemmi::Element::atomic_number (C++ function) gemmi::Element::covalent_r (C++ function) gemmi::Element::elem (C++ member) gemmi::Element::Element (C++ function), [1], [2], [3] gemmi::Element::is_chalcogen (C++ function) gemmi::Element::is_halogen (C++ function) gemmi::Element::is_hydrogen (C++ function) gemmi::Element::is_metal (C++ function) gemmi::Element::name (C++ function) gemmi::Element::operator El (C++ function) gemmi::Element::operator!= (C++ function), [1] gemmi::Element::operator== (C++ function) gemmi::Element::ordinal (C++ function) gemmi::Element::uname (C++ function) gemmi::Element::vdw_r (C++ function) gemmi::Element::weight (C++ function) gemmi::element_group (C++ function) gemmi::element_name (C++ function) gemmi::element_row (C++ function) gemmi::element_uppercase_name (C++ function) gemmi::elname_t (C++ type) gemmi::ends_with (C++ function) gemmi::EnerLib (C++ struct) gemmi::EnerLib::Atom (C++ struct) gemmi::EnerLib::Atom::element (C++ member) gemmi::EnerLib::Atom::hb_type (C++ member) gemmi::EnerLib::Atom::ion_radius (C++ member) gemmi::EnerLib::Atom::sp (C++ member) gemmi::EnerLib::Atom::valency (C++ member) gemmi::EnerLib::Atom::vdw_radius (C++ member) gemmi::EnerLib::Atom::vdwh_radius (C++ member) gemmi::EnerLib::atoms (C++ member) gemmi::EnerLib::Bond (C++ struct) gemmi::EnerLib::Bond::atom_type_1 (C++ member) gemmi::EnerLib::Bond::atom_type_2 (C++ member) gemmi::EnerLib::Bond::length (C++ member) gemmi::EnerLib::Bond::operator< (C++ function) gemmi::EnerLib::Bond::type (C++ member) gemmi::EnerLib::Bond::value_esd (C++ member) gemmi::EnerLib::bonds (C++ member) gemmi::EnerLib::EnerLib (C++ function) gemmi::EnerLib::RadiusType (C++ enum) gemmi::EnerLib::RadiusType::Ion (C++ enumerator) gemmi::EnerLib::RadiusType::Vdw (C++ enumerator) gemmi::EnerLib::RadiusType::Vdwh (C++ enumerator) gemmi::EnerLib::read (C++ function) gemmi::ensure_anisou (C++ function), [1] gemmi::ensure_entities (C++ function) gemmi::ensure_unique_chain_name (C++ function) gemmi::Entity (C++ struct) gemmi::Entity::DbRef (C++ struct) gemmi::Entity::DbRef::accession_code (C++ member) gemmi::Entity::DbRef::db_begin (C++ member) gemmi::Entity::DbRef::db_end (C++ member) gemmi::Entity::DbRef::db_name (C++ member) gemmi::Entity::DbRef::id_code (C++ member) gemmi::Entity::DbRef::isoform (C++ member) gemmi::Entity::DbRef::label_seq_begin (C++ member) gemmi::Entity::DbRef::label_seq_end (C++ member) gemmi::Entity::DbRef::seq_begin (C++ member) gemmi::Entity::DbRef::seq_end (C++ member) gemmi::Entity::dbrefs (C++ member) gemmi::Entity::Entity (C++ function), [1] gemmi::Entity::entity_type (C++ member) gemmi::Entity::first_mon (C++ function) gemmi::Entity::full_sequence (C++ member) gemmi::Entity::name (C++ member) gemmi::Entity::polymer_type (C++ member) gemmi::Entity::reflects_microhetero (C++ member) gemmi::Entity::sifts_unp_acc (C++ member) gemmi::Entity::subchains (C++ member) gemmi::entity_type_from_string (C++ function) gemmi::entity_type_to_string (C++ function) gemmi::EntityType (C++ enum) gemmi::EntityType::Branched (C++ enumerator) gemmi::EntityType::NonPolymer (C++ enumerator) gemmi::EntityType::Polymer (C++ enumerator) gemmi::EntityType::Unknown (C++ enumerator) gemmi::EntityType::Water (C++ enumerator) gemmi::estimate_uncompressed_size (C++ function) gemmi::evaluate_polynomial (C++ function) gemmi::expand_box (C++ function), [1] gemmi::expand_if_pdb_code (C++ function) gemmi::expand_ncs (C++ function) gemmi::expand_ncs_model (C++ function) gemmi::expand_one_letter (C++ function) gemmi::expand_one_letter_sequence (C++ function) gemmi::expand_pdb_code_to_path (C++ function) gemmi::expand_protein_one_letter (C++ function) gemmi::expand_protein_one_letter_string (C++ function) gemmi::ExpAnisoSum (C++ struct) gemmi::ExpAnisoSum::a (C++ member) gemmi::ExpAnisoSum::b (C++ member) gemmi::ExpAnisoSum::calculate (C++ function) gemmi::ExpAnisoSum<N, float> (C++ struct) gemmi::ExpAnisoSum<N, float>::a (C++ member) gemmi::ExpAnisoSum<N, float>::b (C++ member) gemmi::ExpAnisoSum<N, float>::calculate (C++ function) gemmi::ExperimentInfo (C++ struct) gemmi::ExperimentInfo::b_wilson (C++ member) gemmi::ExperimentInfo::diffraction_ids (C++ member) gemmi::ExperimentInfo::method (C++ member) gemmi::ExperimentInfo::number_of_crystals (C++ member) gemmi::ExperimentInfo::reflections (C++ member) gemmi::ExperimentInfo::shells (C++ member) gemmi::ExperimentInfo::unique_reflections (C++ member) gemmi::ExpSum (C++ struct) gemmi::ExpSum::a (C++ member) gemmi::ExpSum::b (C++ member) gemmi::ExpSum::calculate (C++ function) gemmi::ExpSum::calculate_with_derivative (C++ function) gemmi::ExpSum<N, float> (C++ struct) gemmi::ExpSum<N, float>::a (C++ member) gemmi::ExpSum<N, float>::b (C++ member) gemmi::ExpSum<N, float>::calculate (C++ function) gemmi::ExpSum<N, float>::calculate_with_derivative (C++ function) gemmi::extract_isosurface (C++ function) gemmi::fail (C++ function), [1] gemmi::fast_atof (C++ function) gemmi::fast_calc_rmsd_and_rotation (C++ function) gemmi::fast_from_chars (C++ function), [1] gemmi::FastaSeq (C++ struct) gemmi::FastaSeq::header (C++ member) gemmi::FastaSeq::seq (C++ member) gemmi::file_open (C++ function) gemmi::file_open_or (C++ function) gemmi::file_open_or_null (C++ function) gemmi::file_size (C++ function) gemmi::fileptr_t (C++ type) gemmi::FileStream (C++ struct) gemmi::FileStream::f (C++ member) gemmi::FileStream::FileStream (C++ function), [1] gemmi::FileStream::getc (C++ function) gemmi::FileStream::gets (C++ function) gemmi::FileStream::read (C++ function) gemmi::FileStream::read_rest (C++ function) gemmi::FileStream::skip (C++ function) gemmi::FileStream::tell (C++ function) gemmi::FilterIter (C++ type) gemmi::FilterIterPolicy (C++ class) gemmi::FilterIterPolicy::const_policy (C++ type) gemmi::FilterIterPolicy::decrement (C++ function) gemmi::FilterIterPolicy::dereference (C++ function) gemmi::FilterIterPolicy::equal (C++ function) gemmi::FilterIterPolicy::filter_ (C++ member) gemmi::FilterIterPolicy::FilterIterPolicy (C++ function), [1] gemmi::FilterIterPolicy::increment (C++ function) gemmi::FilterIterPolicy::matches (C++ function) gemmi::FilterIterPolicy::operator const_policy (C++ function) gemmi::FilterIterPolicy::pos_ (C++ member) gemmi::FilterIterPolicy::reference (C++ type) gemmi::FilterIterPolicy::value_type (C++ type) gemmi::FilterIterPolicy::vec_ (C++ member) gemmi::FilterProxy (C++ struct) gemmi::FilterProxy::begin (C++ function) gemmi::FilterProxy::end (C++ function) gemmi::FilterProxy::filter (C++ member) gemmi::FilterProxy::iterator (C++ type) gemmi::FilterProxy::vec (C++ member) gemmi::find_asu_brick (C++ function) gemmi::find_best_plane (C++ function) gemmi::find_blobs_by_flood_fill (C++ function) gemmi::find_element (C++ function) gemmi::find_entity_of_subchain (C++ function), [1], [2], [3] gemmi::find_lattice_2fold_ops (C++ function) gemmi::find_lattice_symmetry (C++ function) gemmi::find_lattice_symmetry_r (C++ function) gemmi::find_missing_atoms (C++ function) gemmi::find_spacegroup_by_name (C++ function) gemmi::find_spacegroup_by_number (C++ function) gemmi::find_spacegroup_by_ops (C++ function) gemmi::find_tabulated_residue (C++ function) gemmi::find_tabulated_residue_idx (C++ function) gemmi::find_twin_laws (C++ function) gemmi::FlatAtom (C++ struct) gemmi::FlatAtom::altloc (C++ member) gemmi::FlatAtom::aniso (C++ member) gemmi::FlatAtom::atom_name (C++ member) gemmi::FlatAtom::atom_str (C++ function) gemmi::FlatAtom::b_iso (C++ member) gemmi::FlatAtom::chain_id (C++ member) gemmi::FlatAtom::charge (C++ member) gemmi::FlatAtom::element (C++ member) gemmi::FlatAtom::entity_id (C++ member) gemmi::FlatAtom::entity_type (C++ member) gemmi::FlatAtom::het_flag (C++ member) gemmi::FlatAtom::model_num (C++ member) gemmi::FlatAtom::occ (C++ member) gemmi::FlatAtom::pos (C++ member) gemmi::FlatAtom::residue_name (C++ member) gemmi::FlatAtom::selected (C++ member) gemmi::FlatAtom::seq_id (C++ member) gemmi::FlatAtom::serial (C++ member) gemmi::FlatAtom::subchain (C++ member) gemmi::FlatStructure (C++ struct) gemmi::FlatStructure::empty_st (C++ member) gemmi::FlatStructure::FlatStructure (C++ function) gemmi::FlatStructure::generate_structure (C++ function) gemmi::FlatStructure::strings_as_numbers (C++ member) gemmi::FlatStructure::table (C++ member) gemmi::flood_fill_above (C++ function) gemmi::FloodFill (C++ struct) gemmi::FloodFill::add_lines (C++ function) gemmi::FloodFill::find_all_connected_points (C++ function) gemmi::FloodFill::for_each_islands (C++ function) gemmi::FloodFill::Line (C++ struct) gemmi::FloodFill::Line::ptr (C++ member) gemmi::FloodFill::Line::u (C++ member) gemmi::FloodFill::Line::ulen (C++ member) gemmi::FloodFill::Line::v (C++ member) gemmi::FloodFill::Line::w (C++ member) gemmi::FloodFill::line_from_point (C++ function) gemmi::FloodFill::mask (C++ member) gemmi::FloodFill::Result (C++ struct) gemmi::FloodFill::Result::lines (C++ member) gemmi::FloodFill::Result::point_count (C++ function) gemmi::FloodFill::set_line_values (C++ function) gemmi::FloodFill::set_volume_values (C++ function) gemmi::FloodFill::this_island (C++ function) gemmi::for_all_reflections (C++ function) gemmi::for_matching_reflections (C++ function) gemmi::FPhiGrid (C++ type) gemmi::FPhiProxy (C++ struct) gemmi::FPhiProxy::f_col_ (C++ member) gemmi::FPhiProxy::FPhiProxy (C++ function) gemmi::FPhiProxy::get_f (C++ function) gemmi::FPhiProxy::get_phi (C++ function) gemmi::FPhiProxy::phi_col_ (C++ member) gemmi::FPhiProxy::real (C++ type) gemmi::Fractional (C++ struct) gemmi::Fractional::Fractional (C++ function), [1] gemmi::Fractional::move_toward_zero_by_one (C++ function) gemmi::Fractional::operator+ (C++ function) gemmi::Fractional::operator- (C++ function) gemmi::Fractional::round (C++ function) gemmi::Fractional::wrap_to_unit (C++ function) gemmi::Fractional::wrap_to_zero (C++ function) gemmi::friedel_mate_value (C++ function), [1] gemmi::FTransform (C++ struct) gemmi::FTransform::apply (C++ function) gemmi::FTransform::FTransform (C++ function), [1] gemmi::GaussianCoef (C++ struct) gemmi::GaussianCoef::a (C++ function) gemmi::GaussianCoef::b (C++ function) gemmi::GaussianCoef::c (C++ function) gemmi::GaussianCoef::calculate_density_aniso (C++ function) gemmi::GaussianCoef::calculate_density_iso (C++ function) gemmi::GaussianCoef::calculate_sf (C++ function) gemmi::GaussianCoef::coef_type (C++ type) gemmi::GaussianCoef::coefs (C++ member) gemmi::GaussianCoef::ncoeffs (C++ member) gemmi::GaussianCoef::precalculate_density_aniso_b (C++ function) gemmi::GaussianCoef::precalculate_density_aniso_u (C++ function) gemmi::GaussianCoef::precalculate_density_iso (C++ function) gemmi::GaussianCoef::set_coefs (C++ function) gemmi::generate_chemcomp_xyz_from_restraints (C++ function) gemmi::generators_from_hall (C++ function) gemmi::get_asu_mask (C++ function) gemmi::get_basisop (C++ function) gemmi::get_distance_from_plane (C++ function) gemmi::get_f_phi_on_grid (C++ function) gemmi::get_gemmi_sequence (C++ function) gemmi::get_mainchain_atoms (C++ function) gemmi::get_nearby_sym_ops (C++ function) gemmi::get_nonzero_extent (C++ function) gemmi::get_or_check_polymer_type (C++ function) gemmi::get_refln_block (C++ function) gemmi::get_residue_info (C++ function) gemmi::get_size_for_hkl (C++ function) gemmi::get_software_from_mtz_history (C++ function) gemmi::get_spacegroup_by_name (C++ function) gemmi::get_spacegroup_by_number (C++ function) gemmi::get_spacegroup_p1 (C++ function) gemmi::get_spacegroup_reference_setting (C++ function) gemmi::get_sym_image (C++ function) gemmi::get_value_on_grid (C++ function) gemmi::giends_with (C++ function) gemmi::glob_match (C++ function) gemmi::GlobWalk (C++ struct) gemmi::GlobWalk::GlobWalk (C++ function) gemmi::good_grid_size (C++ function), [1] gemmi::Grid (C++ struct), [1] gemmi::Grid::calculate_spacing (C++ function), [1] gemmi::Grid::change_values (C++ function), [1] gemmi::Grid::check_size_for_points_in_box (C++ function), [1] gemmi::Grid::copy_4x4x4 (C++ function), [1] gemmi::Grid::copy_metadata_from (C++ function), [1] gemmi::Grid::do_use_points_in_box (C++ function), [1] gemmi::Grid::get_nearest_index (C++ function), [1] gemmi::Grid::get_nearest_point (C++ function), [1], [2], [3] gemmi::Grid::get_point (C++ function), [1] gemmi::Grid::get_subarray (C++ function), [1] gemmi::Grid::get_value (C++ function), [1] gemmi::Grid::grid_modulo (C++ function), [1] gemmi::Grid::index_s (C++ function), [1] gemmi::Grid::interpolate_value (C++ function), [1], [2], [3] gemmi::Grid::normalize (C++ function), [1] gemmi::Grid::orth_n (C++ member), [1] gemmi::Grid::Point (C++ type), [1] gemmi::Grid::point_to_fractional (C++ function), [1] gemmi::Grid::point_to_position (C++ function), [1] gemmi::Grid::set_points_around (C++ function), [1] gemmi::Grid::set_size (C++ function), [1] gemmi::Grid::set_size_from_spacing (C++ function), [1] gemmi::Grid::set_size_without_checking (C++ function), [1] gemmi::Grid::set_subarray (C++ function), [1] gemmi::Grid::set_unit_cell (C++ function), [1], [2], [3] gemmi::Grid::set_value (C++ function), [1] gemmi::Grid::setup_from (C++ function), [1] gemmi::Grid::spacing (C++ member), [1] gemmi::Grid::symmetrize (C++ function), [1] gemmi::Grid::symmetrize_abs_max (C++ function), [1] gemmi::Grid::symmetrize_avg (C++ function), [1] gemmi::Grid::symmetrize_max (C++ function), [1] gemmi::Grid::symmetrize_min (C++ function), [1] gemmi::Grid::symmetrize_nondefault (C++ function), [1] gemmi::Grid::symmetrize_sum (C++ function), [1] gemmi::Grid::symmetrize_using_ops (C++ function), [1] gemmi::Grid::tricubic_interpolation (C++ function), [1], [2], [3], [4], [5] gemmi::Grid::tricubic_interpolation_der (C++ function), [1], [2], [3] gemmi::Grid::trilinear_interpolation (C++ function), [1], [2], [3], [4], [5] gemmi::Grid::use_points_around (C++ function), [1] gemmi::Grid::use_points_in_box (C++ function), [1] gemmi::GridBase (C++ struct), [1] gemmi::GridBase::begin (C++ function), [1] gemmi::GridBase::check_not_empty (C++ function), [1] gemmi::GridBase::data (C++ member), [1] gemmi::GridBase::end (C++ function), [1] gemmi::GridBase::fill (C++ function), [1] gemmi::GridBase::get_value_q (C++ function), [1] gemmi::GridBase::index_to_point (C++ function), [1] gemmi::GridBase::iterator (C++ struct), [1] gemmi::GridBase::iterator::index (C++ member), [1] gemmi::GridBase::iterator::iterator (C++ function), [1] gemmi::GridBase::iterator::operator!= (C++ function), [1] gemmi::GridBase::iterator::operator* (C++ function), [1] gemmi::GridBase::iterator::operator++ (C++ function), [1] gemmi::GridBase::iterator::operator== (C++ function), [1] gemmi::GridBase::iterator::parent (C++ member), [1] gemmi::GridBase::iterator::u (C++ member), [1] gemmi::GridBase::iterator::v (C++ member), [1] gemmi::GridBase::iterator::w (C++ member), [1] gemmi::GridBase::Point (C++ struct), [1] gemmi::GridBase::Point::u (C++ member), [1] gemmi::GridBase::Point::v (C++ member), [1] gemmi::GridBase::Point::value (C++ member), [1] gemmi::GridBase::Point::w (C++ member), [1] gemmi::GridBase::point_to_index (C++ function), [1] gemmi::GridBase::set_size_without_checking (C++ function), [1] gemmi::GridBase::sum (C++ function), [1] gemmi::GridBase::Tsum (C++ type), [1] gemmi::GridMeta (C++ struct), [1] gemmi::GridMeta::axis_order (C++ member), [1] gemmi::GridMeta::get_fractional (C++ function), [1] gemmi::GridMeta::get_position (C++ function), [1] gemmi::GridMeta::get_scaled_ops_except_id (C++ function), [1] gemmi::GridMeta::index_n (C++ function), [1] gemmi::GridMeta::index_n_ref (C++ function), [1] gemmi::GridMeta::index_near_zero (C++ function), [1] gemmi::GridMeta::index_q (C++ function), [1], [2], [3] gemmi::GridMeta::nu (C++ member), [1] gemmi::GridMeta::nv (C++ member), [1] gemmi::GridMeta::nw (C++ member), [1] gemmi::GridMeta::point_count (C++ function), [1] gemmi::GridMeta::spacegroup (C++ member), [1] gemmi::GridMeta::unit_cell (C++ member), [1] gemmi::GridOp (C++ struct), [1] gemmi::GridOp::apply (C++ function), [1] gemmi::GridOp::scaled_op (C++ member), [1] gemmi::GridSizeRounding (C++ enum), [1] gemmi::GridSizeRounding::Down (C++ enumerator), [1] gemmi::GridSizeRounding::Nearest (C++ enumerator), [1] gemmi::GridSizeRounding::Up (C++ enumerator), [1] gemmi::GroupingIter (C++ type) gemmi::GroupingIterPolicy (C++ class) gemmi::GroupingIterPolicy::const_policy (C++ type) gemmi::GroupingIterPolicy::decrement (C++ function) gemmi::GroupingIterPolicy::dereference (C++ function) gemmi::GroupingIterPolicy::equal (C++ function) gemmi::GroupingIterPolicy::GroupingIterPolicy (C++ function), [1] gemmi::GroupingIterPolicy::increment (C++ function) gemmi::GroupingIterPolicy::operator const_policy (C++ function) gemmi::GroupingIterPolicy::reference (C++ type) gemmi::GroupingIterPolicy::span_ (C++ member) gemmi::GroupingIterPolicy::value_type (C++ type) gemmi::GroupOps (C++ struct) gemmi::GroupOps::add_inversion (C++ function) gemmi::GroupOps::add_missing_elements (C++ function) gemmi::GroupOps::add_missing_elements_part2 (C++ function) gemmi::GroupOps::all_ops_sorted (C++ function) gemmi::GroupOps::are_directions_symmetry_related (C++ function) gemmi::GroupOps::begin (C++ function) gemmi::GroupOps::cen_ops (C++ member) gemmi::GroupOps::change_basis_backward (C++ function) gemmi::GroupOps::change_basis_forward (C++ function) gemmi::GroupOps::change_basis_impl (C++ function) gemmi::GroupOps::derive_symmorphic (C++ function) gemmi::GroupOps::end (C++ function) gemmi::GroupOps::epsilon_factor (C++ function) gemmi::GroupOps::epsilon_factor_without_centering (C++ function) gemmi::GroupOps::find_by_rotation (C++ function), [1] gemmi::GroupOps::find_centering (C++ function) gemmi::GroupOps::find_grid_factors (C++ function) gemmi::GroupOps::get_op (C++ function) gemmi::GroupOps::has_phase_shift (C++ function) gemmi::GroupOps::has_same_centring (C++ function) gemmi::GroupOps::has_same_rotations (C++ function) gemmi::GroupOps::is_centrosymmetric (C++ function) gemmi::GroupOps::is_reflection_centric (C++ function) gemmi::GroupOps::is_same_as (C++ function) gemmi::GroupOps::is_systematically_absent (C++ function) gemmi::GroupOps::Iter (C++ struct) gemmi::GroupOps::Iter::gops (C++ member) gemmi::GroupOps::Iter::n_cen (C++ member) gemmi::GroupOps::Iter::n_sym (C++ member) gemmi::GroupOps::Iter::operator!= (C++ function) gemmi::GroupOps::Iter::operator* (C++ function) gemmi::GroupOps::Iter::operator++ (C++ function) gemmi::GroupOps::Iter::operator== (C++ function) gemmi::GroupOps::order (C++ function) gemmi::GroupOps::sym_ops (C++ member) gemmi::GruberVector (C++ struct) gemmi::GruberVector::A (C++ member) gemmi::GruberVector::add_column (C++ function) gemmi::GruberVector::B (C++ member) gemmi::GruberVector::buerger_reduce (C++ function) gemmi::GruberVector::buerger_step (C++ function) gemmi::GruberVector::C (C++ member) gemmi::GruberVector::cell_parameters (C++ function) gemmi::GruberVector::change_of_basis (C++ member) gemmi::GruberVector::eta (C++ member) gemmi::GruberVector::get_cell (C++ function) gemmi::GruberVector::GruberVector (C++ function), [1], [2], [3] gemmi::GruberVector::is_buerger (C++ function) gemmi::GruberVector::is_niggli (C++ function) gemmi::GruberVector::is_normalized (C++ function) gemmi::GruberVector::negate_column (C++ function) gemmi::GruberVector::niggli_reduce (C++ function) gemmi::GruberVector::niggli_step (C++ function) gemmi::GruberVector::normalize (C++ function) gemmi::GruberVector::parameters (C++ function) gemmi::GruberVector::selling (C++ function) gemmi::GruberVector::set_change_of_basis (C++ function) gemmi::GruberVector::swap_columns_and_negate (C++ function) gemmi::GruberVector::xi (C++ member) gemmi::GruberVector::zeta (C++ member) gemmi::GzStream (C++ struct) gemmi::GzStream::f (C++ member) gemmi::GzStream::getc (C++ function) gemmi::GzStream::gets (C++ function) gemmi::GzStream::GzStream (C++ function) gemmi::GzStream::read (C++ function) gemmi::GzStream::read_rest (C++ function) gemmi::GzStream::skip (C++ function) gemmi::GzStream::tell (C++ function) gemmi::h2o_weight (C++ function) gemmi::has_hydrogen (C++ function), [1] gemmi::has_sequences (C++ function) gemmi::has_small_factorization (C++ function), [1] gemmi::have_nucleotide_bond (C++ function) gemmi::have_peptide_bond (C++ function) gemmi::HBond (C++ struct) gemmi::HBond::acceptor (C++ member) gemmi::HBond::alt1 (C++ member) gemmi::HBond::alt2 (C++ member) gemmi::HBond::donor (C++ member) gemmi::HBond::energy (C++ member) gemmi::HBond::is_valid (C++ member) gemmi::HBondDefinition (C++ enum) gemmi::HBondDefinition::Energy (C++ enumerator) gemmi::HBondDefinition::Geometry (C++ enumerator) gemmi::hc (C++ function) gemmi::Helix (C++ struct) gemmi::Helix::end (C++ member) gemmi::Helix::HelixClass (C++ enum) gemmi::Helix::HelixClass::Helix27 (C++ enumerator) gemmi::Helix::HelixClass::HelixPolyProlineNone (C++ enumerator) gemmi::Helix::HelixClass::LAlpha (C++ enumerator) gemmi::Helix::HelixClass::LGamma (C++ enumerator) gemmi::Helix::HelixClass::LOmega (C++ enumerator) gemmi::Helix::HelixClass::R310 (C++ enumerator) gemmi::Helix::HelixClass::RAlpha (C++ enumerator) gemmi::Helix::HelixClass::RGamma (C++ enumerator) gemmi::Helix::HelixClass::ROmega (C++ enumerator) gemmi::Helix::HelixClass::RPi (C++ enumerator) gemmi::Helix::HelixClass::UnknownHelix (C++ enumerator) gemmi::Helix::length (C++ member) gemmi::Helix::pdb_helix_class (C++ member) gemmi::Helix::set_helix_class_as_int (C++ function) gemmi::Helix::start (C++ member) gemmi::HelixPosition (C++ enum) gemmi::HelixPosition::End (C++ enumerator) gemmi::HelixPosition::Middle (C++ enumerator) gemmi::HelixPosition::None (C++ enumerator) gemmi::HelixPosition::Start (C++ enumerator) gemmi::HelixPosition::StartAndEnd (C++ enumerator) gemmi::hkl_cif_as_refln_block (C++ function) gemmi::HklValue (C++ struct) gemmi::HklValue::hkl (C++ member) gemmi::HklValue::operator< (C++ function), [1] gemmi::HklValue::value (C++ member) gemmi::HowToNameCopiedChain (C++ enum) gemmi::HowToNameCopiedChain::AddNumber (C++ enumerator) gemmi::HowToNameCopiedChain::Dup (C++ enumerator) gemmi::HowToNameCopiedChain::Short (C++ enumerator) gemmi::HydrogenChange (C++ enum) gemmi::HydrogenChange::NoChange (C++ enumerator) gemmi::HydrogenChange::ReAdd (C++ enumerator) gemmi::HydrogenChange::ReAddButWater (C++ enumerator) gemmi::HydrogenChange::ReAddKnown (C++ enumerator) gemmi::HydrogenChange::Remove (C++ enumerator) gemmi::HydrogenChange::Shift (C++ enumerator) gemmi::HydrogenMode (C++ enum) gemmi::HydrogenMode::Calculate (C++ enumerator) gemmi::HydrogenMode::Existing (C++ enumerator) gemmi::ialpha3_id (C++ function) gemmi::ialpha4_id (C++ function) gemmi::iends_with (C++ function) gemmi::iequal (C++ function) gemmi::iequal_from (C++ function) gemmi::Ifstream (C++ struct) gemmi::Ifstream::Ifstream (C++ function) gemmi::Ifstream::keeper_ (C++ member) gemmi::Ifstream::operator-> (C++ function) gemmi::Ifstream::ptr_ (C++ member) gemmi::Ifstream::ref (C++ function) gemmi::impl (C++ type), [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] gemmi::impl::chain_subchains (C++ function), [1] gemmi::impl::find_iter (C++ function), [1] gemmi::impl::find_iter_ (C++ function), [1] gemmi::impl::find_or_add (C++ function), [1] gemmi::impl::find_or_null (C++ function), [1] gemmi::impl::find_single_letter_element (C++ function) gemmi::impl::get_by_altloc (C++ function), [1] gemmi::impl::get_id (C++ function), [1] gemmi::impl::GridConstPoint (C++ struct) gemmi::impl::GridConstPoint::u (C++ member) gemmi::impl::GridConstPoint::v (C++ member) gemmi::impl::GridConstPoint::value (C++ member) gemmi::impl::GridConstPoint::w (C++ member) gemmi::impl::is_nan (C++ function), [1] gemmi::impl::is_rxsf_ent_filename (C++ function) gemmi::impl::is_same (C++ function), [1] gemmi::impl::IsAnyFile (C++ struct) gemmi::impl::IsAnyFile::check (C++ function) gemmi::impl::IsCifFile (C++ struct) gemmi::impl::IsCifFile::check (C++ function) gemmi::impl::IsCoordinateFile (C++ struct) gemmi::impl::IsCoordinateFile::check (C++ function) gemmi::impl::IsMatchingFile (C++ struct) gemmi::impl::IsMatchingFile::check (C++ function) gemmi::impl::IsMatchingFile::pattern (C++ member) gemmi::impl::IsMmCifFile (C++ struct) gemmi::impl::IsMmCifFile::check (C++ function) gemmi::impl::IsPdbFile (C++ struct) gemmi::impl::IsPdbFile::check (C++ function) gemmi::impl::length (C++ function), [1] gemmi::impl::make_blob_of_points (C++ function) gemmi::impl::model_subchains (C++ function), [1] gemmi::impl::move_to_asu (C++ function), [1] gemmi::impl::read_data (C++ function) gemmi::impl::read_dsn6_i16 (C++ function) gemmi::impl::translate_map_point (C++ function) gemmi::impl::translate_map_point<float, std::int8_t> (C++ function) gemmi::impl::translate_map_point<float16_type, std::int8_t> (C++ function) gemmi::impl::trim_false_values (C++ function) gemmi::impl::TwoFold (C++ type) gemmi::impl::TwoFold_ (C++ struct) gemmi::impl::TwoFold_::table (C++ member) gemmi::impl::TwoFoldData (C++ struct) gemmi::impl::TwoFoldData::ds_axis (C++ member) gemmi::impl::TwoFoldData::matrix (C++ member) gemmi::impl::TwoFoldData::rs_axis (C++ member) gemmi::impl::utf8_tinydir_file_open (C++ function) gemmi::impl::write_data (C++ function) gemmi::in_nucleotide_bond_distance (C++ function) gemmi::in_peptide_bond_distance (C++ function) gemmi::in_vector (C++ function) gemmi::in_vector_f (C++ function) gemmi::IndirectIter (C++ type) gemmi::IndirectIterPolicy (C++ class) gemmi::IndirectIterPolicy::const_policy (C++ type) gemmi::IndirectIterPolicy::cur_ (C++ member) gemmi::IndirectIterPolicy::decrement (C++ function) gemmi::IndirectIterPolicy::dereference (C++ function) gemmi::IndirectIterPolicy::equal (C++ function) gemmi::IndirectIterPolicy::increment (C++ function) gemmi::IndirectIterPolicy::IndirectIterPolicy (C++ function), [1] gemmi::IndirectIterPolicy::operator const_policy (C++ function) gemmi::IndirectIterPolicy::redir_ (C++ member) gemmi::IndirectIterPolicy::reference (C++ type) gemmi::IndirectIterPolicy::value_type (C++ type) gemmi::initialize_hkl_grid (C++ function) gemmi::Intensities (C++ struct) gemmi::Intensities::add_if_valid (C++ function) gemmi::Intensities::AnisoScaling (C++ struct) gemmi::Intensities::AnisoScaling::b (C++ member) gemmi::Intensities::AnisoScaling::ok (C++ function) gemmi::Intensities::AnisoScaling::scale (C++ function) gemmi::Intensities::calculate_correlation (C++ function) gemmi::Intensities::calculate_merging_stats (C++ function) gemmi::Intensities::data (C++ member) gemmi::Intensities::import_anomalous_intensities_from_mmcif (C++ function) gemmi::Intensities::import_anomalous_intensities_from_mtz (C++ function) gemmi::Intensities::import_f_squared_from_mmcif (C++ function) gemmi::Intensities::import_mean_intensities_from_mmcif (C++ function) gemmi::Intensities::import_mean_intensities_from_mtz (C++ function) gemmi::Intensities::import_mtz (C++ function) gemmi::Intensities::import_refln_block (C++ function) gemmi::Intensities::import_unmerged_intensities_from_mmcif (C++ function) gemmi::Intensities::import_unmerged_intensities_from_mtz (C++ function) gemmi::Intensities::import_xds (C++ function) gemmi::Intensities::isym_ops (C++ member) gemmi::Intensities::merge_in_place (C++ function) gemmi::Intensities::merged (C++ function) gemmi::Intensities::prepare_for_merging (C++ function) gemmi::Intensities::prepare_merged_mtz (C++ function) gemmi::Intensities::Refl (C++ struct) gemmi::Intensities::Refl::hkl (C++ member) gemmi::Intensities::Refl::hkl_label (C++ function) gemmi::Intensities::Refl::intensity_label (C++ function) gemmi::Intensities::Refl::isign (C++ member) gemmi::Intensities::Refl::isym (C++ member) gemmi::Intensities::Refl::nobs (C++ member) gemmi::Intensities::Refl::operator< (C++ function) gemmi::Intensities::Refl::sigma (C++ member) gemmi::Intensities::Refl::value (C++ member) gemmi::Intensities::remove_systematic_absences (C++ function) gemmi::Intensities::resolution_range (C++ function) gemmi::Intensities::sort (C++ function) gemmi::Intensities::spacegroup (C++ member) gemmi::Intensities::spacegroup_str (C++ function) gemmi::Intensities::staraniso_b (C++ member) gemmi::Intensities::switch_to_asu_indices (C++ function) gemmi::Intensities::take_staraniso_b_from_mmcif (C++ function) gemmi::Intensities::take_staraniso_b_from_mtz (C++ function) gemmi::Intensities::type (C++ member) gemmi::Intensities::type_str (C++ function), [1] gemmi::Intensities::unit_cell (C++ member) gemmi::Intensities::unit_cell_rmsd (C++ member) gemmi::Intensities::wavelength (C++ member) gemmi::IntensitiesDataProxy (C++ struct) gemmi::IntensitiesDataProxy::get_hkl (C++ function) gemmi::IntensitiesDataProxy::get_num (C++ function) gemmi::IntensitiesDataProxy::intensities_ (C++ member) gemmi::IntensitiesDataProxy::size (C++ function) gemmi::IntensitiesDataProxy::spacegroup (C++ function) gemmi::IntensitiesDataProxy::stride (C++ function) gemmi::IntensitiesDataProxy::unit_cell (C++ function) gemmi::interpolate_grid (C++ function), [1] gemmi::interpolate_grid_around_model (C++ function) gemmi::iround (C++ function) gemmi::is_aromatic_or_deloc (C++ function) gemmi::is_blank (C++ function) gemmi::is_complete (C++ function) gemmi::is_digit (C++ function) gemmi::is_enantiomorphic (C++ function) gemmi::is_hydrogen (C++ function) gemmi::is_in_list (C++ function) gemmi::is_little_endian (C++ function) gemmi::is_metal (C++ function) gemmi::is_metal_value (C++ function) gemmi::is_pdb_code (C++ function) gemmi::is_peptide_bond_cis (C++ function) gemmi::is_pir_format (C++ function) gemmi::is_polynucleotide (C++ function) gemmi::is_polypeptide (C++ function) gemmi::is_record_type3 (C++ function) gemmi::is_record_type4 (C++ function) gemmi::is_same_conformer (C++ function), [1] gemmi::is_sohncke (C++ function) gemmi::is_space (C++ function) gemmi::is_symmorphic (C++ function) gemmi::isame (C++ function) gemmi::iso_method_from_string (C++ function) gemmi::IsoMethod (C++ enum) gemmi::IsoMethod::MarchingCubes (C++ enumerator) gemmi::IsoMethod::SnappedMC (C++ enumerator) gemmi::IsoSurface (C++ struct) gemmi::IsoSurface::triangles (C++ member) gemmi::IsoSurface::vertices (C++ member) gemmi::istarts_with (C++ function) gemmi::IT92 (C++ struct) gemmi::IT92::Coef (C++ type) gemmi::IT92::data (C++ member) gemmi::IT92::get (C++ function) gemmi::IT92::get_exact (C++ function) gemmi::IT92::has (C++ function) gemmi::IT92::ignore_charge (C++ member) gemmi::IT92::ion_list (C++ member) gemmi::IT92::normalize (C++ function) gemmi::IT92::normalize_one (C++ function) gemmi::it92_radius_approx (C++ function) gemmi::ItemGroup (C++ struct) gemmi::ItemGroup::back (C++ function), [1] gemmi::ItemGroup::begin (C++ function) gemmi::ItemGroup::element_type (C++ type) gemmi::ItemGroup::empty (C++ function) gemmi::ItemGroup::end (C++ function) gemmi::ItemGroup::extent (C++ function) gemmi::ItemGroup::extent_ (C++ member) gemmi::ItemGroup::front (C++ function), [1] gemmi::ItemGroup::ItemGroup (C++ function) gemmi::ItemGroup::iterator (C++ struct) gemmi::ItemGroup::iterator::end (C++ member) gemmi::ItemGroup::iterator::operator!= (C++ function) gemmi::ItemGroup::iterator::operator* (C++ function) gemmi::ItemGroup::iterator::operator++ (C++ function) gemmi::ItemGroup::iterator::operator-> (C++ function) gemmi::ItemGroup::iterator::operator== (C++ function) gemmi::ItemGroup::iterator::ptr (C++ member) gemmi::ItemGroup::operator[] (C++ function), [1] gemmi::ItemGroup::size (C++ function) gemmi::ItemGroup::size_ (C++ member) gemmi::ItemGroup::start_ (C++ member) gemmi::join_str (C++ function), [1], [2], [3] gemmi::jordan_solve (C++ function), [1] gemmi::Laue (C++ enum) gemmi::Laue::L1 (C++ enumerator) gemmi::Laue::L2m (C++ enumerator) gemmi::Laue::L3 (C++ enumerator) gemmi::Laue::L3m (C++ enumerator) gemmi::Laue::L4m (C++ enumerator) gemmi::Laue::L4mmm (C++ enumerator) gemmi::Laue::L6m (C++ enumerator) gemmi::Laue::L6mmm (C++ enumerator) gemmi::Laue::Lm3 (C++ enumerator) gemmi::Laue::Lm3m (C++ enumerator) gemmi::Laue::Lmmm (C++ enumerator) gemmi::laue_class_str (C++ function) gemmi::laue_to_pointgroup (C++ function) gemmi::lerp_ (C++ function), [1], [2], [3] gemmi::LevMar (C++ struct) gemmi::LevMar::alpha (C++ member) gemmi::LevMar::beta (C++ member) gemmi::LevMar::eval_count (C++ member) gemmi::LevMar::eval_limit (C++ member) gemmi::LevMar::fit (C++ function) gemmi::LevMar::initial_wssr (C++ member) gemmi::LevMar::lambda_down_factor (C++ member) gemmi::LevMar::lambda_limit (C++ member) gemmi::LevMar::lambda_start (C++ member) gemmi::LevMar::lambda_up_factor (C++ member) gemmi::LevMar::stop_rel_change (C++ member) gemmi::LevMar::temp_alpha (C++ member) gemmi::LevMar::temp_beta (C++ member) gemmi::likely_in_house_source (C++ function) gemmi::LinkHunt (C++ struct) gemmi::LinkHunt::find_possible_links (C++ function) gemmi::LinkHunt::global_max_dist (C++ member) gemmi::LinkHunt::index_chem_links (C++ function) gemmi::LinkHunt::links (C++ member) gemmi::LinkHunt::Match (C++ struct) gemmi::LinkHunt::Match::bond_length (C++ member) gemmi::LinkHunt::Match::chem_link (C++ member) gemmi::LinkHunt::Match::chem_link_count (C++ member) gemmi::LinkHunt::Match::conn (C++ member) gemmi::LinkHunt::Match::cra1 (C++ member) gemmi::LinkHunt::Match::cra2 (C++ member) gemmi::LinkHunt::Match::same_image (C++ member) gemmi::LinkHunt::Match::score (C++ member) gemmi::LinkHunt::monlib_ptr (C++ member) gemmi::log_bessel_i0 (C++ function) gemmi::log_cosh (C++ function) gemmi::Logger (C++ struct) gemmi::Logger::callback (C++ member) gemmi::Logger::debug (C++ function) gemmi::Logger::level (C++ function) gemmi::Logger::mesg (C++ function) gemmi::Logger::note (C++ function)

gemmi::Logger::resume (C++ function) gemmi::Logger::suspend (C++ function) gemmi::Logger::threshold (C++ member) gemmi::Logger::to_stderr (C++ function) gemmi::Logger::to_stdout (C++ function) gemmi::lower (C++ function) gemmi::make_address (C++ function), [1] gemmi::make_assembly (C++ function) gemmi::make_asu_data (C++ function), [1] gemmi::make_chemcomp_from_block (C++ function) gemmi::make_chemcomp_with_restraints (C++ function) gemmi::make_cif_block_from_small_structure (C++ function) gemmi::make_miller_vector (C++ function) gemmi::make_mmcif_block (C++ function) gemmi::make_mmcif_document (C++ function) gemmi::make_mmcif_headers (C++ function) gemmi::make_model_from_chemcomp_block (C++ function) gemmi::make_one_letter_sequence (C++ function) gemmi::make_pdb_headers (C++ function) gemmi::make_pdb_string (C++ function) gemmi::make_residue_from_chemcomp_block (C++ function) gemmi::make_small_structure_from_block (C++ function) gemmi::make_structure (C++ function) gemmi::make_structure_from_block (C++ function) gemmi::make_structure_from_chemcomp_block (C++ function) gemmi::make_structure_from_chemcomp_doc (C++ function) gemmi::make_structure_from_doc (C++ function) gemmi::MapSetup (C++ enum) gemmi::MapSetup::Full (C++ enumerator) gemmi::MapSetup::NoSymmetry (C++ enumerator) gemmi::MapSetup::ReorderOnly (C++ enumerator) gemmi::mask_nodes_above_threshold (C++ function) gemmi::mask_points_in_constant_radius (C++ function) gemmi::mask_points_in_radius (C++ function) gemmi::mask_points_using_occupancy (C++ function) gemmi::mask_with_node_info (C++ function) gemmi::masked_asu (C++ function) gemmi::MaskedGrid (C++ struct) gemmi::MaskedGrid::begin (C++ function) gemmi::MaskedGrid::end (C++ function) gemmi::MaskedGrid::grid (C++ member) gemmi::MaskedGrid::iterator (C++ struct) gemmi::MaskedGrid::iterator::grid_iterator (C++ member) gemmi::MaskedGrid::iterator::iterator (C++ function) gemmi::MaskedGrid::iterator::mask_ref (C++ member) gemmi::MaskedGrid::iterator::operator!= (C++ function) gemmi::MaskedGrid::iterator::operator* (C++ function) gemmi::MaskedGrid::iterator::operator++ (C++ function) gemmi::MaskedGrid::iterator::operator== (C++ function) gemmi::MaskedGrid::mask (C++ member) gemmi::Mat33 (C++ struct) gemmi::Mat33::a (C++ member) gemmi::Mat33::approx (C++ function) gemmi::Mat33::column_copy (C++ function) gemmi::Mat33::column_dot (C++ function) gemmi::Mat33::determinant (C++ function) gemmi::Mat33::from_columns (C++ function) gemmi::Mat33::has_nan (C++ function) gemmi::Mat33::inverse (C++ function) gemmi::Mat33::is_identity (C++ function) gemmi::Mat33::is_upper_triangular (C++ function) gemmi::Mat33::left_multiply (C++ function) gemmi::Mat33::Mat33 (C++ function), [1], [2] gemmi::Mat33::multiply (C++ function), [1] gemmi::Mat33::multiply_by_diagonal (C++ function) gemmi::Mat33::operator+ (C++ function) gemmi::Mat33::operator- (C++ function) gemmi::Mat33::operator[] (C++ function), [1] gemmi::Mat33::row_copy (C++ function) gemmi::Mat33::row_t (C++ type) gemmi::Mat33::trace (C++ function) gemmi::Mat33::transpose (C++ function) gemmi::match_smarts (C++ function) gemmi::MaybeGzipped (C++ class) gemmi::MaybeGzipped::basepath (C++ function) gemmi::MaybeGzipped::create_stream (C++ function) gemmi::MaybeGzipped::file_ (C++ member) gemmi::MaybeGzipped::gzread_checked (C++ function) gemmi::MaybeGzipped::is_compressed (C++ function) gemmi::MaybeGzipped::MaybeGzipped (C++ function) gemmi::MaybeGzipped::uncompress_into_buffer (C++ function) gemmi::MaybeGzipped::~MaybeGzipped (C++ function) gemmi::MemoryStream (C++ struct) gemmi::MemoryStream::cur (C++ member) gemmi::MemoryStream::end (C++ member) gemmi::MemoryStream::getc (C++ function) gemmi::MemoryStream::gets (C++ function) gemmi::MemoryStream::MemoryStream (C++ function) gemmi::MemoryStream::read (C++ function) gemmi::MemoryStream::read_rest (C++ function) gemmi::MemoryStream::skip (C++ function) gemmi::MemoryStream::start (C++ member) gemmi::MemoryStream::tell (C++ function) gemmi::merge_atoms_in_expanded_model (C++ function) gemmi::MergingStats (C++ struct) gemmi::MergingStats::add_other (C++ function) gemmi::MergingStats::all_refl (C++ member) gemmi::MergingStats::cc_full (C++ function) gemmi::MergingStats::cc_half (C++ function) gemmi::MergingStats::cc_star (C++ function) gemmi::MergingStats::r_denom (C++ member) gemmi::MergingStats::r_meas (C++ function) gemmi::MergingStats::r_meas_num (C++ member) gemmi::MergingStats::r_merge (C++ function) gemmi::MergingStats::r_merge_num (C++ member) gemmi::MergingStats::r_pim (C++ function) gemmi::MergingStats::r_pim_num (C++ member) gemmi::MergingStats::stats_refl (C++ member) gemmi::MergingStats::sum_ibar (C++ member) gemmi::MergingStats::sum_ibar2 (C++ member) gemmi::MergingStats::sum_sig2_eps (C++ member) gemmi::MergingStats::unique_refl (C++ member) gemmi::Metadata (C++ struct) gemmi::Metadata::authors (C++ member) gemmi::Metadata::crystals (C++ member) gemmi::Metadata::experiments (C++ member) gemmi::Metadata::get_tls_groups (C++ function), [1] gemmi::Metadata::has (C++ function), [1], [2], [3] gemmi::Metadata::has_restr (C++ function) gemmi::Metadata::refinement (C++ member) gemmi::Metadata::remark_300_detail (C++ member) gemmi::Metadata::software (C++ member) gemmi::Metadata::solved_by (C++ member) gemmi::Metadata::starting_model (C++ member) gemmi::Miller (C++ type) gemmi::MillerHash (C++ struct) gemmi::MillerHash::operator() (C++ function) gemmi::MmcifOutputGroups (C++ struct) gemmi::MmcifOutputGroups::assembly (C++ member) gemmi::MmcifOutputGroups::atom_type (C++ member) gemmi::MmcifOutputGroups::atoms (C++ member) gemmi::MmcifOutputGroups::auth_all (C++ member) gemmi::MmcifOutputGroups::author (C++ member) gemmi::MmcifOutputGroups::block_name (C++ member) gemmi::MmcifOutputGroups::cell (C++ member) gemmi::MmcifOutputGroups::chem_comp (C++ member) gemmi::MmcifOutputGroups::cis (C++ member) gemmi::MmcifOutputGroups::conn (C++ member) gemmi::MmcifOutputGroups::database_status (C++ member) gemmi::MmcifOutputGroups::diffrn (C++ member) gemmi::MmcifOutputGroups::entity (C++ member) gemmi::MmcifOutputGroups::entity_poly (C++ member) gemmi::MmcifOutputGroups::entity_poly_seq (C++ member) gemmi::MmcifOutputGroups::entry (C++ member) gemmi::MmcifOutputGroups::exptl (C++ member) gemmi::MmcifOutputGroups::group_pdb (C++ member) gemmi::MmcifOutputGroups::MmcifOutputGroups (C++ function) gemmi::MmcifOutputGroups::modres (C++ member) gemmi::MmcifOutputGroups::ncs (C++ member) gemmi::MmcifOutputGroups::origx (C++ member) gemmi::MmcifOutputGroups::refine (C++ member) gemmi::MmcifOutputGroups::reflns (C++ member) gemmi::MmcifOutputGroups::scale (C++ member) gemmi::MmcifOutputGroups::software (C++ member) gemmi::MmcifOutputGroups::struct_asym (C++ member) gemmi::MmcifOutputGroups::struct_biol (C++ member) gemmi::MmcifOutputGroups::struct_conf (C++ member) gemmi::MmcifOutputGroups::struct_ref (C++ member) gemmi::MmcifOutputGroups::struct_sheet (C++ member) gemmi::MmcifOutputGroups::struct_site (C++ member) gemmi::MmcifOutputGroups::symmetry (C++ member) gemmi::MmcifOutputGroups::title_keywords (C++ member) gemmi::MmcifOutputGroups::tls (C++ member) gemmi::MmCifWalk (C++ type) gemmi::Model (C++ struct), [1] gemmi::Model::all (C++ function), [1], [2], [3] gemmi::Model::chains (C++ member), [1] gemmi::Model::child_type (C++ type), [1] gemmi::Model::children (C++ function), [1], [2], [3] gemmi::Model::empty_copy (C++ function), [1] gemmi::Model::find_atom (C++ function), [1], [2], [3] gemmi::Model::find_chain (C++ function), [1], [2], [3] gemmi::Model::find_cra (C++ function), [1], [2], [3] gemmi::Model::find_last_chain (C++ function), [1] gemmi::Model::find_residue (C++ function), [1], [2], [3] gemmi::Model::find_residue_group (C++ function), [1] gemmi::Model::get_all_residue_names (C++ function), [1] gemmi::Model::get_indices (C++ function), [1] gemmi::Model::get_subchain (C++ function), [1], [2], [3] gemmi::Model::merge_chain_parts (C++ function), [1] gemmi::Model::Model (C++ function), [1], [2], [3] gemmi::Model::num (C++ member), [1] gemmi::Model::present_elements (C++ function), [1] gemmi::Model::remove_chain (C++ function), [1] gemmi::Model::sole_residue (C++ function), [1] gemmi::Model::subchain_to_chain (C++ function), [1] gemmi::Model::subchains (C++ function), [1], [2], [3] gemmi::Model::what (C++ function), [1] gemmi::ModRes (C++ struct) gemmi::ModRes::chain_name (C++ member) gemmi::ModRes::details (C++ member) gemmi::ModRes::mod_id (C++ member) gemmi::ModRes::parent_comp_id (C++ member) gemmi::ModRes::res_id (C++ member) gemmi::modulo (C++ function), [1] gemmi::molecular_weight (C++ function) gemmi::MonLib (C++ struct) gemmi::MonLib::add_monomer_if_present (C++ function) gemmi::MonLib::cc_groups (C++ member) gemmi::MonLib::ener_lib (C++ member) gemmi::MonLib::find_ideal_distance (C++ function) gemmi::MonLib::get_link (C++ function) gemmi::MonLib::get_mod (C++ function) gemmi::MonLib::link_side_matches_residue (C++ function) gemmi::MonLib::links (C++ member) gemmi::MonLib::match_link (C++ function) gemmi::MonLib::modifications (C++ member) gemmi::MonLib::monomer_dir (C++ member) gemmi::MonLib::monomers (C++ member) gemmi::MonLib::path (C++ function) gemmi::MonLib::read_monomer_cif (C++ function) gemmi::MonLib::read_monomer_doc (C++ function) gemmi::MonLib::read_monomer_lib (C++ function) gemmi::MonLib::relative_monomer_path (C++ function) gemmi::MonLib::set_monomer_dir (C++ function) gemmi::MonLib::update_old_atom_names (C++ function) gemmi::mott_bethe_const (C++ function) gemmi::Mtz (C++ struct) gemmi::Mtz::add_base (C++ function) gemmi::Mtz::add_column (C++ function) gemmi::Mtz::add_dataset (C++ function) gemmi::Mtz::Batch (C++ struct) gemmi::Mtz::Batch::axes (C++ member) gemmi::Mtz::Batch::Batch (C++ function) gemmi::Mtz::Batch::dataset_id (C++ function) gemmi::Mtz::Batch::floats (C++ member) gemmi::Mtz::Batch::get_cell (C++ function) gemmi::Mtz::Batch::ints (C++ member) gemmi::Mtz::Batch::matrix_U (C++ function) gemmi::Mtz::Batch::number (C++ member) gemmi::Mtz::Batch::phi_end (C++ function) gemmi::Mtz::Batch::phi_start (C++ function) gemmi::Mtz::Batch::set_cell (C++ function) gemmi::Mtz::Batch::set_dataset_id (C++ function) gemmi::Mtz::Batch::set_wavelength (C++ function) gemmi::Mtz::Batch::title (C++ member) gemmi::Mtz::Batch::wavelength (C++ function) gemmi::Mtz::batches (C++ member) gemmi::Mtz::calculate_min_max_1_d2 (C++ function) gemmi::Mtz::Column (C++ struct) gemmi::Mtz::Column::at (C++ function), [1] gemmi::Mtz::Column::begin (C++ function), [1] gemmi::Mtz::Column::const_iterator (C++ type) gemmi::Mtz::Column::dataset (C++ function), [1] gemmi::Mtz::Column::dataset_id (C++ member) gemmi::Mtz::Column::end (C++ function), [1] gemmi::Mtz::Column::get_next_column_if_type (C++ function) gemmi::Mtz::Column::has_data (C++ function) gemmi::Mtz::Column::idx (C++ member) gemmi::Mtz::Column::is_integer (C++ function) gemmi::Mtz::Column::iterator (C++ type) gemmi::Mtz::Column::label (C++ member) gemmi::Mtz::Column::max_value (C++ member) gemmi::Mtz::Column::min_value (C++ member) gemmi::Mtz::Column::operator[] (C++ function), [1] gemmi::Mtz::Column::parent (C++ member) gemmi::Mtz::Column::size (C++ function) gemmi::Mtz::Column::source (C++ member) gemmi::Mtz::Column::stride (C++ function) gemmi::Mtz::Column::type (C++ member) gemmi::Mtz::column_with_label (C++ function), [1] gemmi::Mtz::column_with_one_of_labels (C++ function) gemmi::Mtz::column_with_type_and_any_of_labels (C++ function) gemmi::Mtz::columns (C++ member) gemmi::Mtz::columns_with_type (C++ function) gemmi::Mtz::copy_column (C++ function) gemmi::Mtz::count (C++ function) gemmi::Mtz::count_type (C++ function) gemmi::Mtz::data (C++ member) gemmi::Mtz::dataset (C++ function), [1] gemmi::Mtz::Dataset (C++ struct) gemmi::Mtz::Dataset::cell (C++ member) gemmi::Mtz::Dataset::crystal_name (C++ member) gemmi::Mtz::Dataset::dataset_name (C++ member) gemmi::Mtz::Dataset::id (C++ member) gemmi::Mtz::Dataset::project_name (C++ member) gemmi::Mtz::Dataset::wavelength (C++ member) gemmi::Mtz::dataset_with_name (C++ function), [1] gemmi::Mtz::datasets (C++ member) gemmi::Mtz::ensure_asu (C++ function) gemmi::Mtz::expand_data_rows (C++ function) gemmi::Mtz::expand_to_p1 (C++ function) gemmi::Mtz::find_offset_of_hkl (C++ function) gemmi::Mtz::get_average_cell_from_batch_headers (C++ function) gemmi::Mtz::get_cell (C++ function), [1] gemmi::Mtz::get_column_with_label (C++ function) gemmi::Mtz::get_hkl (C++ function) gemmi::Mtz::has_data (C++ function) gemmi::Mtz::imean_column (C++ function), [1] gemmi::Mtz::iminus_column (C++ function), [1] gemmi::Mtz::iplus_column (C++ function), [1] gemmi::Mtz::is_merged (C++ function) gemmi::Mtz::last_dataset (C++ function) gemmi::Mtz::Mtz (C++ function), [1], [2] gemmi::Mtz::operator= (C++ function), [1] gemmi::Mtz::positions_of_columns_with_type (C++ function) gemmi::Mtz::positions_of_plus_minus_columns (C++ function) gemmi::Mtz::read_all_headers (C++ function) gemmi::Mtz::read_file (C++ function) gemmi::Mtz::read_file_gz (C++ function) gemmi::Mtz::read_first_bytes (C++ function) gemmi::Mtz::read_history_and_batch_headers (C++ function) gemmi::Mtz::read_input (C++ function) gemmi::Mtz::read_main_headers (C++ function) gemmi::Mtz::read_raw_data (C++ function) gemmi::Mtz::read_stream (C++ function) gemmi::Mtz::reindex (C++ function) gemmi::Mtz::remove_column (C++ function) gemmi::Mtz::remove_rows_if (C++ function) gemmi::Mtz::replace_column (C++ function) gemmi::Mtz::resolution_high (C++ function) gemmi::Mtz::resolution_low (C++ function) gemmi::Mtz::rfree_column (C++ function), [1] gemmi::Mtz::set_cell_for_all (C++ function) gemmi::Mtz::set_data (C++ function) gemmi::Mtz::set_hkl (C++ function) gemmi::Mtz::set_spacegroup (C++ function) gemmi::Mtz::setup_spacegroup (C++ function) gemmi::Mtz::size_to_write (C++ function) gemmi::Mtz::sort (C++ function) gemmi::Mtz::sorted_row_indices (C++ function) gemmi::Mtz::switch_to_asu_hkl (C++ function) gemmi::Mtz::switch_to_original_hkl (C++ function) gemmi::Mtz::toggle_endianness (C++ function) gemmi::Mtz::update_reso (C++ function) gemmi::Mtz::write_to_buffer (C++ function) gemmi::Mtz::write_to_cstream (C++ function) gemmi::Mtz::write_to_file (C++ function) gemmi::Mtz::write_to_stream (C++ function) gemmi::Mtz::write_to_string (C++ function) gemmi::MtzDataProxy (C++ struct) gemmi::MtzDataProxy::column_index (C++ function) gemmi::MtzDataProxy::get_hkl (C++ function) gemmi::MtzDataProxy::get_num (C++ function) gemmi::MtzDataProxy::mtz_ (C++ member) gemmi::MtzDataProxy::num_type (C++ type) gemmi::MtzDataProxy::size (C++ function) gemmi::MtzDataProxy::spacegroup (C++ function) gemmi::MtzDataProxy::stride (C++ function) gemmi::MtzDataProxy::unit_cell (C++ function) gemmi::MtzExternalDataProxy (C++ struct) gemmi::MtzExternalDataProxy::data_ (C++ member) gemmi::MtzExternalDataProxy::get_hkl (C++ function) gemmi::MtzExternalDataProxy::get_num (C++ function) gemmi::MtzExternalDataProxy::MtzExternalDataProxy (C++ function) gemmi::MtzExternalDataProxy::size (C++ function) gemmi::MtzMetadata (C++ struct) gemmi::MtzMetadata::appended_text (C++ member) gemmi::MtzMetadata::cell (C++ member) gemmi::MtzMetadata::header_offset (C++ member) gemmi::MtzMetadata::history (C++ member) gemmi::MtzMetadata::indices_switched_to_original (C++ member) gemmi::MtzMetadata::logger (C++ member) gemmi::MtzMetadata::max_1_d2 (C++ member) gemmi::MtzMetadata::min_1_d2 (C++ member) gemmi::MtzMetadata::nreflections (C++ member) gemmi::MtzMetadata::nsymop (C++ member) gemmi::MtzMetadata::same_byte_order (C++ member) gemmi::MtzMetadata::sort_order (C++ member) gemmi::MtzMetadata::source_path (C++ member) gemmi::MtzMetadata::spacegroup (C++ member) gemmi::MtzMetadata::spacegroup_name (C++ member) gemmi::MtzMetadata::spacegroup_number (C++ member) gemmi::MtzMetadata::symops (C++ member) gemmi::MtzMetadata::title (C++ member) gemmi::MtzMetadata::valm (C++ member) gemmi::MtzMetadata::version_stamp (C++ member) gemmi::MtzToCif (C++ class) gemmi::MtzToCif::block_name (C++ member) gemmi::MtzToCif::default_spec (C++ function) gemmi::MtzToCif::enable_UB (C++ member) gemmi::MtzToCif::entry_id (C++ member) gemmi::MtzToCif::free_flag_value (C++ member) gemmi::MtzToCif::gemmi_run_from (C++ member) gemmi::MtzToCif::less_anomalous (C++ member) gemmi::MtzToCif::skip_empty (C++ member) gemmi::MtzToCif::skip_empty_cols (C++ member) gemmi::MtzToCif::skip_negative_sigi (C++ member) gemmi::MtzToCif::spec_lines (C++ member) gemmi::MtzToCif::staraniso_version (C++ member) gemmi::MtzToCif::trim (C++ member) gemmi::MtzToCif::wavelength (C++ member) gemmi::MtzToCif::with_comments (C++ member) gemmi::MtzToCif::with_history (C++ member) gemmi::MtzToCif::write_cif (C++ function) gemmi::MtzToCif::write_cif_from_xds (C++ function) gemmi::MtzToCif::write_special_marker_for_pdb (C++ member) gemmi::MtzToCif::write_staraniso_tensor (C++ member) gemmi::MutableVectorSpan (C++ struct) gemmi::MutableVectorSpan::erase (C++ function) gemmi::MutableVectorSpan::insert (C++ function) gemmi::MutableVectorSpan::is_beginning (C++ function) gemmi::MutableVectorSpan::is_ending (C++ function) gemmi::MutableVectorSpan::iterator (C++ type) gemmi::MutableVectorSpan::MutableVectorSpan (C++ function), [1], [2] gemmi::MutableVectorSpan::sub (C++ function) gemmi::MutableVectorSpan::subspan (C++ function), [1] gemmi::MutableVectorSpan::vector_ (C++ member) gemmi::MutableVectorSpan::vector_type (C++ type) gemmi::mx_to_sx_structure (C++ function) gemmi::NcsOp (C++ struct) gemmi::NcsOp::apply (C++ function) gemmi::NcsOp::given (C++ member) gemmi::NcsOp::id (C++ member) gemmi::NcsOp::tr (C++ member) gemmi::NearestImage (C++ struct) gemmi::NearestImage::dist (C++ function) gemmi::NearestImage::dist_sq (C++ member) gemmi::NearestImage::pbc_shift (C++ member) gemmi::NearestImage::same_asu (C++ function) gemmi::NearestImage::sym_idx (C++ member) gemmi::NearestImage::symmetry_code (C++ function) gemmi::needs_fclose (C++ struct) gemmi::needs_fclose::operator() (C++ function) gemmi::needs_fclose::use_fclose (C++ member) gemmi::NeighborSearch (C++ struct) gemmi::NeighborSearch::add_atom (C++ function) gemmi::NeighborSearch::add_chain (C++ function) gemmi::NeighborSearch::add_chain_n (C++ function) gemmi::NeighborSearch::add_site (C++ function) gemmi::NeighborSearch::dist (C++ function) gemmi::NeighborSearch::dist_sq (C++ function) gemmi::NeighborSearch::find_atoms (C++ function) gemmi::NeighborSearch::find_nearest_atom (C++ function) gemmi::NeighborSearch::find_nearest_atom_within_k (C++ function) gemmi::NeighborSearch::find_neighbors (C++ function) gemmi::NeighborSearch::find_site_neighbors (C++ function) gemmi::NeighborSearch::for_each (C++ function) gemmi::NeighborSearch::for_each_cell (C++ function) gemmi::NeighborSearch::get_image_transformation (C++ function) gemmi::NeighborSearch::get_subcell (C++ function) gemmi::NeighborSearch::grid (C++ member) gemmi::NeighborSearch::include_h (C++ member) gemmi::NeighborSearch::Mark (C++ struct) gemmi::NeighborSearch::Mark::altloc (C++ member) gemmi::NeighborSearch::Mark::atom_idx (C++ member) gemmi::NeighborSearch::Mark::chain_idx (C++ member) gemmi::NeighborSearch::Mark::element (C++ member) gemmi::NeighborSearch::Mark::image_idx (C++ member) gemmi::NeighborSearch::Mark::Mark (C++ function) gemmi::NeighborSearch::Mark::pos (C++ member) gemmi::NeighborSearch::Mark::residue_idx (C++ member) gemmi::NeighborSearch::Mark::to_cra (C++ function), [1] gemmi::NeighborSearch::Mark::to_site (C++ function), [1] gemmi::NeighborSearch::model (C++ member) gemmi::NeighborSearch::NeighborSearch (C++ function), [1], [2] gemmi::NeighborSearch::populate (C++ function) gemmi::NeighborSearch::radius_specified (C++ member) gemmi::NeighborSearch::set_bounding_cell (C++ function) gemmi::NeighborSearch::set_grid_size (C++ function) gemmi::NeighborSearch::small_structure (C++ member) gemmi::NeighborSearch::sufficient_k (C++ function) gemmi::NeighborSearch::use_pbc (C++ member) gemmi::Neutron92 (C++ struct) gemmi::Neutron92::Coef (C++ type) gemmi::Neutron92::data (C++ member) gemmi::Neutron92::get (C++ function) gemmi::Neutron92::get_ (C++ function) gemmi::Neutron92::has (C++ function) gemmi::no_sign_atoi (C++ function) gemmi::NodeInfo (C++ struct) gemmi::NodeInfo::dist_sq (C++ member) gemmi::NodeInfo::found (C++ member) gemmi::NodeInfo::u (C++ member) gemmi::NodeInfo::v (C++ member) gemmi::NodeInfo::w (C++ member) gemmi::nonzero_inversion_center (C++ function) gemmi::Ofstream (C++ struct) gemmi::Ofstream::keeper_ (C++ member) gemmi::Ofstream::Ofstream (C++ function) gemmi::Ofstream::operator-> (C++ function) gemmi::Ofstream::ptr_ (C++ member) gemmi::Ofstream::ref (C++ function) gemmi::one_letter_code (C++ function) gemmi::Op (C++ struct) gemmi::Op::add_centering (C++ function) gemmi::Op::apply_to_hkl (C++ function) gemmi::Op::apply_to_hkl_without_division (C++ function) gemmi::Op::apply_to_xyz (C++ function) gemmi::Op::as_hkl (C++ function) gemmi::Op::as_xyz (C++ function) gemmi::Op::combine (C++ function) gemmi::Op::DEN (C++ member) gemmi::Op::det_rot (C++ function) gemmi::Op::divide_hkl_by_DEN (C++ function) gemmi::Op::float_seitz (C++ function) gemmi::Op::identity (C++ function) gemmi::Op::int_seitz (C++ function) gemmi::Op::inverse (C++ function) gemmi::Op::inversion_rot (C++ function) gemmi::Op::is_hkl (C++ function) gemmi::Op::Miller (C++ type) gemmi::Op::negated_rot (C++ function) gemmi::Op::notation (C++ member) gemmi::Op::operator< (C++ function) gemmi::Op::phase_shift (C++ function) gemmi::Op::rot (C++ member) gemmi::Op::Rot (C++ type) gemmi::Op::rot_type (C++ function) gemmi::Op::tran (C++ member) gemmi::Op::Tran (C++ type) gemmi::Op::translate (C++ function) gemmi::Op::translated (C++ function) gemmi::Op::transpose (C++ function) gemmi::Op::transposed_rot (C++ function) gemmi::Op::triplet (C++ function) gemmi::Op::wrap (C++ function) gemmi::Op::wrapped_tran (C++ function) gemmi::open_stream_from_utf8_path (C++ function) gemmi::operator!= (C++ function) gemmi::operator* (C++ function), [1], [2] gemmi::operator*= (C++ function) gemmi::operator< (C++ function), [1] gemmi::operator== (C++ function) gemmi::operator| (C++ function) gemmi::OpObliquity (C++ type) gemmi::OptionalInt (C++ struct) gemmi::OptionalInt::emplace (C++ function) gemmi::OptionalInt::has_value (C++ function) gemmi::OptionalInt::operator bool (C++ function) gemmi::OptionalInt::operator int (C++ function) gemmi::OptionalInt::operator!= (C++ function), [1] gemmi::OptionalInt::operator* (C++ function), [1] gemmi::OptionalInt::operator+ (C++ function) gemmi::OptionalInt::operator+= (C++ function) gemmi::OptionalInt::operator- (C++ function) gemmi::OptionalInt::operator-= (C++ function) gemmi::OptionalInt::operator< (C++ function) gemmi::OptionalInt::operator= (C++ function) gemmi::OptionalInt::operator== (C++ function), [1] gemmi::OptionalInt::OptionalInt (C++ function), [1] gemmi::OptionalInt::PhonyNameDueToError::None (C++ enumerator) gemmi::OptionalInt::reset (C++ function) gemmi::OptionalInt::str (C++ function) gemmi::OptionalInt::value (C++ member) gemmi::OptionalInt::value_type (C++ type) gemmi::order_of_bond_type (C++ function) gemmi::parse_triplet (C++ function) gemmi::parse_triplet_as_ftransform (C++ function) gemmi::parse_triplet_part (C++ function) gemmi::path_basename (C++ function) gemmi::path_in_pdb_dir (C++ function) gemmi::PdbReadOptions (C++ struct), [1] gemmi::PdbReadOptions::check_non_ascii (C++ member), [1] gemmi::PdbReadOptions::ignore_ter (C++ member), [1] gemmi::PdbReadOptions::max_line_length (C++ member), [1] gemmi::PdbReadOptions::skip_remarks (C++ member), [1] gemmi::PdbReadOptions::split_chain_on_ter (C++ member), [1] gemmi::PdbWalk (C++ type) gemmi::PdbWriteOptions (C++ struct) gemmi::PdbWriteOptions::atom_records (C++ member) gemmi::PdbWriteOptions::cispep_records (C++ member) gemmi::PdbWriteOptions::conect_records (C++ member) gemmi::PdbWriteOptions::cryst1_record (C++ member) gemmi::PdbWriteOptions::end_record (C++ member) gemmi::PdbWriteOptions::headers_only (C++ function) gemmi::PdbWriteOptions::link_records (C++ member) gemmi::PdbWriteOptions::minimal (C++ function) gemmi::PdbWriteOptions::minimal_file (C++ member) gemmi::PdbWriteOptions::numbered_ter (C++ member) gemmi::PdbWriteOptions::preserve_serial (C++ member) gemmi::PdbWriteOptions::seqres_records (C++ member) gemmi::PdbWriteOptions::ssbond_records (C++ member) gemmi::PdbWriteOptions::ter_ignores_type (C++ member) gemmi::PdbWriteOptions::ter_records (C++ member) gemmi::PdbWriteOptions::use_link_id (C++ member) gemmi::PdbWriteOptions::use_linkr (C++ member) gemmi::pdbx_one_letter_code (C++ function) gemmi::phase_in_angles (C++ function) gemmi::pi (C++ function) gemmi::place_hydrogens_on_all_atoms (C++ function) gemmi::point_group (C++ function) gemmi::point_group_hm (C++ function) gemmi::point_group_index_and_category (C++ function) gemmi::PointGroup (C++ enum) gemmi::PointGroup::C1 (C++ enumerator) gemmi::PointGroup::C2 (C++ enumerator) gemmi::PointGroup::C2h (C++ enumerator) gemmi::PointGroup::C2v (C++ enumerator) gemmi::PointGroup::C3 (C++ enumerator) gemmi::PointGroup::C3h (C++ enumerator) gemmi::PointGroup::C3i (C++ enumerator) gemmi::PointGroup::C3v (C++ enumerator) gemmi::PointGroup::C4 (C++ enumerator) gemmi::PointGroup::C4h (C++ enumerator) gemmi::PointGroup::C4v (C++ enumerator) gemmi::PointGroup::C6 (C++ enumerator) gemmi::PointGroup::C6h (C++ enumerator) gemmi::PointGroup::C6v (C++ enumerator) gemmi::PointGroup::Ci (C++ enumerator) gemmi::PointGroup::Cs (C++ enumerator) gemmi::PointGroup::D2 (C++ enumerator) gemmi::PointGroup::D2d (C++ enumerator) gemmi::PointGroup::D2h (C++ enumerator) gemmi::PointGroup::D3 (C++ enumerator) gemmi::PointGroup::D3d (C++ enumerator) gemmi::PointGroup::D3h (C++ enumerator) gemmi::PointGroup::D4 (C++ enumerator) gemmi::PointGroup::D4h (C++ enumerator) gemmi::PointGroup::D6 (C++ enumerator) gemmi::PointGroup::D6h (C++ enumerator) gemmi::PointGroup::O (C++ enumerator) gemmi::PointGroup::Oh (C++ enumerator) gemmi::PointGroup::S4 (C++ enumerator) gemmi::PointGroup::T (C++ enumerator) gemmi::PointGroup::Td (C++ enumerator) gemmi::PointGroup::Th (C++ enumerator) gemmi::pointgroup_to_laue (C++ function) gemmi::polymer_type_from_string (C++ function) gemmi::polymer_type_to_string (C++ function) gemmi::PolymerType (C++ enum) gemmi::PolymerType::CyclicPseudoPeptide (C++ enumerator) gemmi::PolymerType::Dna (C++ enumerator) gemmi::PolymerType::DnaRnaHybrid (C++ enumerator) gemmi::PolymerType::Other (C++ enumerator) gemmi::PolymerType::PeptideD (C++ enumerator) gemmi::PolymerType::PeptideL (C++ enumerator) gemmi::PolymerType::Pna (C++ enumerator) gemmi::PolymerType::Rna (C++ enumerator) gemmi::PolymerType::SaccharideD (C++ enumerator) gemmi::PolymerType::SaccharideL (C++ enumerator) gemmi::PolymerType::Unknown (C++ enumerator) gemmi::populate_structure_from_block (C++ function) gemmi::populate_structure_from_pdb_memory (C++ function) gemmi::populate_structure_from_pdb_stream (C++ function) gemmi::populate_structure_from_pdb_string (C++ function) gemmi::Position (C++ struct) gemmi::Position::operator* (C++ function) gemmi::Position::operator*= (C++ function) gemmi::Position::operator+ (C++ function) gemmi::Position::operator+= (C++ function) gemmi::Position::operator- (C++ function), [1] gemmi::Position::operator-= (C++ function) gemmi::Position::operator/ (C++ function) gemmi::Position::operator/= (C++ function) gemmi::Position::Position (C++ function), [1] gemmi::possible_old_style (C++ function) gemmi::pow15 (C++ function) gemmi::prepare_positions_for_superposition (C++ function) gemmi::prepare_refmac_crd (C++ function) gemmi::prepare_target_gapo (C++ function) gemmi::prepare_topology (C++ function) gemmi::print_parameters (C++ function) gemmi::process_addresses (C++ function) gemmi::process_sequence_ids (C++ function) gemmi::pseudo_assembly_for_unit_cell (C++ function) gemmi::psimpl (C++ type) gemmi::psimpl::action (C++ struct) gemmi::psimpl::action<and_rest> (C++ struct) gemmi::psimpl::action<and_rest>::apply0 (C++ function) gemmi::psimpl::action<op_eq> (C++ struct) gemmi::psimpl::action<op_eq>::apply0 (C++ function) gemmi::psimpl::action<op_ge> (C++ struct) gemmi::psimpl::action<op_ge>::apply0 (C++ function) gemmi::psimpl::action<op_gt> (C++ struct) gemmi::psimpl::action<op_gt>::apply0 (C++ function) gemmi::psimpl::action<op_le> (C++ struct) gemmi::psimpl::action<op_le>::apply0 (C++ function) gemmi::psimpl::action<op_lt> (C++ struct) gemmi::psimpl::action<op_lt>::apply0 (C++ function) gemmi::psimpl::action<op_ne> (C++ struct) gemmi::psimpl::action<op_ne>::apply0 (C++ function) gemmi::psimpl::action<or_rest> (C++ struct) gemmi::psimpl::action<or_rest>::apply0 (C++ function) gemmi::psimpl::action<rule_all> (C++ struct) gemmi::psimpl::action<rule_all>::apply0 (C++ function) gemmi::psimpl::action<rule_backbone> (C++ struct) gemmi::psimpl::action<rule_backbone>::apply0 (C++ function) gemmi::psimpl::action<rule_chain> (C++ struct) gemmi::psimpl::action<rule_chain>::apply0 (C++ function) gemmi::psimpl::action<rule_elem> (C++ struct) gemmi::psimpl::action<rule_elem>::apply0 (C++ function) gemmi::psimpl::action<rule_hetatm> (C++ struct) gemmi::psimpl::action<rule_hetatm>::apply0 (C++ function) gemmi::psimpl::action<rule_hydrogens> (C++ struct) gemmi::psimpl::action<rule_hydrogens>::apply0 (C++ function) gemmi::psimpl::action<rule_name> (C++ struct) gemmi::psimpl::action<rule_name>::apply0 (C++ function) gemmi::psimpl::action<rule_not> (C++ struct) gemmi::psimpl::action<rule_not>::apply0 (C++ function) gemmi::psimpl::action<rule_polymer> (C++ struct) gemmi::psimpl::action<rule_polymer>::apply0 (C++ function) gemmi::psimpl::action<rule_resn> (C++ struct) gemmi::psimpl::action<rule_resn>::apply0 (C++ function) gemmi::psimpl::action<rule_sidechain> (C++ struct) gemmi::psimpl::action<rule_sidechain>::apply0 (C++ function) gemmi::psimpl::action<rule_solvent> (C++ struct) gemmi::psimpl::action<rule_solvent>::apply0 (C++ function) gemmi::psimpl::action<rule_water> (C++ struct) gemmi::psimpl::action<rule_water>::apply0 (C++ function) gemmi::psimpl::action<val_alt> (C++ struct) gemmi::psimpl::action<val_alt>::apply (C++ function) gemmi::psimpl::action<val_b_compare> (C++ struct) gemmi::psimpl::action<val_b_compare>::apply (C++ function) gemmi::psimpl::action<val_chain_item> (C++ struct) gemmi::psimpl::action<val_chain_item>::apply (C++ function) gemmi::psimpl::action<val_elem_item> (C++ struct) gemmi::psimpl::action<val_elem_item>::apply (C++ function) gemmi::psimpl::action<val_index_range> (C++ struct) gemmi::psimpl::action<val_index_range>::apply (C++ function) gemmi::psimpl::action<val_index_single> (C++ struct) gemmi::psimpl::action<val_index_single>::apply (C++ function) gemmi::psimpl::action<val_name_item> (C++ struct) gemmi::psimpl::action<val_name_item>::apply (C++ function) gemmi::psimpl::action<val_q_compare> (C++ struct) gemmi::psimpl::action<val_q_compare>::apply (C++ function) gemmi::psimpl::action<val_resi_range> (C++ struct) gemmi::psimpl::action<val_resi_range>::apply (C++ function) gemmi::psimpl::action<val_resi_single> (C++ struct) gemmi::psimpl::action<val_resi_single>::apply (C++ function) gemmi::psimpl::action<val_resn_item> (C++ struct) gemmi::psimpl::action<val_resn_item>::apply (C++ function) gemmi::psimpl::AllNode (C++ struct) gemmi::psimpl::AllNode::match (C++ function) gemmi::psimpl::AltLocNode (C++ struct) gemmi::psimpl::AltLocNode::alt (C++ member) gemmi::psimpl::AltLocNode::AltLocNode (C++ function) gemmi::psimpl::AltLocNode::match (C++ function) gemmi::psimpl::and_rest (C++ struct) gemmi::psimpl::AndNode (C++ struct) gemmi::psimpl::AndNode::left (C++ member) gemmi::psimpl::AndNode::match (C++ function) gemmi::psimpl::AndNode::right (C++ member) gemmi::psimpl::atom_name_str (C++ struct) gemmi::psimpl::AtomNameNode (C++ type) gemmi::psimpl::BackboneNode (C++ struct) gemmi::psimpl::BackboneNode::match (C++ function) gemmi::psimpl::BfactorNode (C++ struct) gemmi::psimpl::BfactorNode::BfactorNode (C++ function) gemmi::psimpl::BfactorNode::match (C++ function) gemmi::psimpl::BfactorNode::op (C++ member) gemmi::psimpl::BfactorNode::value (C++ member) gemmi::psimpl::ChainNode (C++ type) gemmi::psimpl::compare_op (C++ struct) gemmi::psimpl::CompareOp (C++ enum) gemmi::psimpl::CompareOp::EQ (C++ enumerator) gemmi::psimpl::CompareOp::GE (C++ enumerator) gemmi::psimpl::CompareOp::GT (C++ enumerator) gemmi::psimpl::CompareOp::LE (C++ enumerator) gemmi::psimpl::CompareOp::LT (C++ enumerator) gemmi::psimpl::CompareOp::NE (C++ enumerator) gemmi::psimpl::element_str (C++ struct) gemmi::psimpl::ElementNode (C++ struct) gemmi::psimpl::ElementNode::ElementNode (C++ function) gemmi::psimpl::ElementNode::elems (C++ member) gemmi::psimpl::ElementNode::match (C++ function) gemmi::psimpl::EntityTypeNode (C++ struct) gemmi::psimpl::EntityTypeNode::EntityTypeNode (C++ function) gemmi::psimpl::EntityTypeNode::etype (C++ member) gemmi::psimpl::EntityTypeNode::match (C++ function) gemmi::psimpl::expression (C++ struct) gemmi::psimpl::factor (C++ struct) gemmi::psimpl::float_num (C++ struct) gemmi::psimpl::GlobMatchNode (C++ struct) gemmi::psimpl::GlobMatchNode::GlobMatchNode (C++ function) gemmi::psimpl::GlobMatchNode::match (C++ function) gemmi::psimpl::GlobMatchNode::names (C++ member) gemmi::psimpl::grammar (C++ struct) gemmi::psimpl::HetatmNode (C++ struct) gemmi::psimpl::HetatmNode::hetatm (C++ member) gemmi::psimpl::HetatmNode::HetatmNode (C++ function) gemmi::psimpl::HetatmNode::match (C++ function) gemmi::psimpl::HydrogenNode (C++ struct) gemmi::psimpl::HydrogenNode::match (C++ function) gemmi::psimpl::identifier (C++ struct) gemmi::psimpl::IndexRangeNode (C++ struct) gemmi::psimpl::IndexRangeNode::IndexRangeNode (C++ function) gemmi::psimpl::IndexRangeNode::match (C++ function) gemmi::psimpl::IndexRangeNode::max (C++ member) gemmi::psimpl::IndexRangeNode::min (C++ member) gemmi::psimpl::integer (C++ struct) gemmi::psimpl::kw_all (C++ struct) gemmi::psimpl::kw_alt (C++ struct) gemmi::psimpl::kw_and (C++ struct) gemmi::psimpl::kw_b (C++ struct) gemmi::psimpl::kw_backbone (C++ struct) gemmi::psimpl::kw_chain (C++ struct) gemmi::psimpl::kw_elem (C++ struct) gemmi::psimpl::kw_h_dot (C++ struct) gemmi::psimpl::kw_hetatm (C++ struct) gemmi::psimpl::kw_hydrogens (C++ struct) gemmi::psimpl::kw_id (C++ struct) gemmi::psimpl::kw_index (C++ struct) gemmi::psimpl::kw_name (C++ struct) gemmi::psimpl::kw_not (C++ struct) gemmi::psimpl::kw_or (C++ struct) gemmi::psimpl::kw_polymer (C++ struct) gemmi::psimpl::kw_q (C++ struct) gemmi::psimpl::kw_resi (C++ struct) gemmi::psimpl::kw_resn (C++ struct) gemmi::psimpl::kw_sidechain (C++ struct) gemmi::psimpl::kw_solvent (C++ struct) gemmi::psimpl::kw_water (C++ struct) gemmi::psimpl::Node (C++ struct) gemmi::psimpl::Node::match (C++ function) gemmi::psimpl::Node::~Node (C++ function) gemmi::psimpl::not_factor (C++ struct) gemmi::psimpl::NotNode (C++ struct) gemmi::psimpl::NotNode::child (C++ member) gemmi::psimpl::NotNode::match (C++ function) gemmi::psimpl::NotNode::NotNode (C++ function) gemmi::psimpl::OccupancyNode (C++ struct) gemmi::psimpl::OccupancyNode::match (C++ function) gemmi::psimpl::OccupancyNode::OccupancyNode (C++ function) gemmi::psimpl::OccupancyNode::op (C++ member) gemmi::psimpl::OccupancyNode::value (C++ member) gemmi::psimpl::op_eq (C++ struct) gemmi::psimpl::op_ge (C++ struct) gemmi::psimpl::op_gt (C++ struct) gemmi::psimpl::op_le (C++ struct) gemmi::psimpl::op_lt (C++ struct) gemmi::psimpl::op_ne (C++ struct) gemmi::psimpl::or_rest (C++ struct) gemmi::psimpl::OrNode (C++ struct) gemmi::psimpl::OrNode::left (C++ member) gemmi::psimpl::OrNode::match (C++ function) gemmi::psimpl::OrNode::right (C++ member) gemmi::psimpl::parens (C++ struct) gemmi::psimpl::property (C++ struct) gemmi::psimpl::ResiRangeNode (C++ struct) gemmi::psimpl::ResiRangeNode::match (C++ function) gemmi::psimpl::ResiRangeNode::max (C++ member) gemmi::psimpl::ResiRangeNode::min (C++ member) gemmi::psimpl::ResiRangeNode::ResiRangeNode (C++ function) gemmi::psimpl::ResnNode (C++ type) gemmi::psimpl::rule_all (C++ struct) gemmi::psimpl::rule_alt (C++ struct) gemmi::psimpl::rule_b (C++ struct) gemmi::psimpl::rule_backbone (C++ struct) gemmi::psimpl::rule_chain (C++ struct) gemmi::psimpl::rule_elem (C++ struct) gemmi::psimpl::rule_hetatm (C++ struct) gemmi::psimpl::rule_hydrogens (C++ struct) gemmi::psimpl::rule_index (C++ struct) gemmi::psimpl::rule_name (C++ struct) gemmi::psimpl::rule_not (C++ struct) gemmi::psimpl::rule_polymer (C++ struct) gemmi::psimpl::rule_q (C++ struct) gemmi::psimpl::rule_resi (C++ struct) gemmi::psimpl::rule_resn (C++ struct) gemmi::psimpl::rule_sidechain (C++ struct) gemmi::psimpl::rule_solvent (C++ struct) gemmi::psimpl::rule_water (C++ struct) gemmi::psimpl::sep (C++ struct) gemmi::psimpl::SidechainNode (C++ struct) gemmi::psimpl::SidechainNode::match (C++ function) gemmi::psimpl::State (C++ struct) gemmi::psimpl::State::current_op (C++ member) gemmi::psimpl::State::stack (C++ member) gemmi::psimpl::State::string_list (C++ member) gemmi::psimpl::term (C++ struct) gemmi::psimpl::val_alt (C++ struct) gemmi::psimpl::val_b_compare (C++ struct) gemmi::psimpl::val_chain_item (C++ struct) gemmi::psimpl::val_chain_list (C++ struct) gemmi::psimpl::val_elem_item (C++ struct) gemmi::psimpl::val_elem_list (C++ struct) gemmi::psimpl::val_index_range (C++ struct) gemmi::psimpl::val_index_single (C++ struct) gemmi::psimpl::val_name_item (C++ struct) gemmi::psimpl::val_name_list (C++ struct) gemmi::psimpl::val_q_compare (C++ struct) gemmi::psimpl::val_resi_range (C++ struct) gemmi::psimpl::val_resi_single (C++ struct) gemmi::psimpl::val_resn_item (C++ struct) gemmi::psimpl::val_resn_list (C++ struct) gemmi::psimpl::ws (C++ struct) gemmi::qcp_calculate_center (C++ function) gemmi::qcp_inner_product (C++ function) gemmi::rad (C++ function) gemmi::read_ccp4_header (C++ function) gemmi::read_ccp4_map (C++ function) gemmi::read_ccp4_mask (C++ function) gemmi::read_cif_from_memory (C++ function) gemmi::read_cif_gz (C++ function) gemmi::read_cif_or_mmjson_gz (C++ function) gemmi::read_dsn6_from_memory (C++ function) gemmi::read_dsn6_map (C++ function) gemmi::read_file_into_buffer (C++ function) gemmi::read_first_block_gz (C++ function) gemmi::read_into_buffer (C++ function) gemmi::read_into_buffer_gz (C++ function) gemmi::read_mmjson_gz (C++ function) gemmi::read_monomer_lib (C++ function) gemmi::read_mtz (C++ function) gemmi::read_mtz_file (C++ function) gemmi::read_pdb (C++ function) gemmi::read_pdb_file (C++ function) gemmi::read_pdb_from_memory (C++ function) gemmi::read_pdb_from_stream (C++ function) gemmi::read_pdb_gz (C++ function) gemmi::read_pdb_string (C++ function) gemmi::read_pir_or_fasta (C++ function) gemmi::read_remark_290 (C++ function) gemmi::read_staraniso_b_from_mtz (C++ function) gemmi::read_stdin_into_buffer (C++ function) gemmi::read_structure (C++ function) gemmi::read_structure_file (C++ function) gemmi::read_structure_from_char_array (C++ function) gemmi::read_structure_from_chemcomp_gz (C++ function) gemmi::read_structure_from_memory (C++ function) gemmi::read_structure_gz (C++ function) gemmi::read_word (C++ function), [1] gemmi::read_xds_ascii (C++ function) gemmi::read_xds_ascii_file (C++ function) gemmi::ReciprocalAsu (C++ struct) gemmi::ReciprocalAsu::condition_str (C++ function) gemmi::ReciprocalAsu::idx (C++ member) gemmi::ReciprocalAsu::is_in (C++ function) gemmi::ReciprocalAsu::is_in_reference_setting (C++ function) gemmi::ReciprocalAsu::is_ref (C++ member) gemmi::ReciprocalAsu::ReciprocalAsu (C++ function) gemmi::ReciprocalAsu::rot (C++ member) gemmi::ReciprocalAsu::to_asu (C++ function), [1] gemmi::ReciprocalAsu::to_asu_sign (C++ function) gemmi::ReciprocalGrid (C++ struct) gemmi::ReciprocalGrid::calculate_1_d2 (C++ function) gemmi::ReciprocalGrid::calculate_d (C++ function) gemmi::ReciprocalGrid::check_index (C++ function) gemmi::ReciprocalGrid::get_value (C++ function) gemmi::ReciprocalGrid::get_value_by_hkl (C++ function) gemmi::ReciprocalGrid::get_value_or_zero (C++ function) gemmi::ReciprocalGrid::half_l (C++ member) gemmi::ReciprocalGrid::has_index (C++ function) gemmi::ReciprocalGrid::index_checked (C++ function) gemmi::ReciprocalGrid::index_n (C++ function) gemmi::ReciprocalGrid::prepare_asu_data (C++ function) gemmi::ReciprocalGrid::set_value (C++ function) gemmi::ReciprocalGrid::to_hkl (C++ function) gemmi::recommended_het_flag (C++ function) gemmi::refine_chemcomp_xyz (C++ function) gemmi::RefinementInfo (C++ struct) gemmi::RefinementInfo::aniso_b (C++ member) gemmi::RefinementInfo::bin_count (C++ member) gemmi::RefinementInfo::bins (C++ member) gemmi::RefinementInfo::cross_validation_method (C++ member) gemmi::RefinementInfo::dpi_blow_r (C++ member) gemmi::RefinementInfo::dpi_blow_rfree (C++ member) gemmi::RefinementInfo::dpi_cruickshank_r (C++ member) gemmi::RefinementInfo::dpi_cruickshank_rfree (C++ member) gemmi::RefinementInfo::id (C++ member) gemmi::RefinementInfo::luzzati_error (C++ member) gemmi::RefinementInfo::mean_b (C++ member) gemmi::RefinementInfo::remarks (C++ member) gemmi::RefinementInfo::Restr (C++ struct) gemmi::RefinementInfo::Restr::count (C++ member) gemmi::RefinementInfo::Restr::dev_ideal (C++ member) gemmi::RefinementInfo::Restr::function (C++ member) gemmi::RefinementInfo::Restr::name (C++ member) gemmi::RefinementInfo::Restr::Restr (C++ function), [1] gemmi::RefinementInfo::Restr::weight (C++ member) gemmi::RefinementInfo::restr_stats (C++ member) gemmi::RefinementInfo::rfree_selection_method (C++ member) gemmi::RefinementInfo::tls_groups (C++ member) gemmi::ReflectionsInfo (C++ struct) gemmi::ReflectionsInfo::completeness (C++ member) gemmi::ReflectionsInfo::mean_I_over_sigma (C++ member) gemmi::ReflectionsInfo::r_merge (C++ member) gemmi::ReflectionsInfo::r_sym (C++ member) gemmi::ReflectionsInfo::redundancy (C++ member) gemmi::ReflectionsInfo::resolution_high (C++ member) gemmi::ReflectionsInfo::resolution_low (C++ member) gemmi::ReflnBlock (C++ struct) gemmi::ReflnBlock::block (C++ member) gemmi::ReflnBlock::cell (C++ member) gemmi::ReflnBlock::check_ok (C++ function) gemmi::ReflnBlock::column_labels (C++ function) gemmi::ReflnBlock::default_loop (C++ member) gemmi::ReflnBlock::diffrn_refln_loop (C++ member) gemmi::ReflnBlock::entry_id (C++ member) gemmi::ReflnBlock::find_column_index (C++ function) gemmi::ReflnBlock::get_column_index (C++ function) gemmi::ReflnBlock::get_hkl_column_indices (C++ function) gemmi::ReflnBlock::is_merged (C++ function) gemmi::ReflnBlock::is_unmerged (C++ function) gemmi::ReflnBlock::make_1_d2_vector (C++ function) gemmi::ReflnBlock::make_d_vector (C++ function) gemmi::ReflnBlock::make_miller_vector (C++ function) gemmi::ReflnBlock::make_vector (C++ function) gemmi::ReflnBlock::ok (C++ function) gemmi::ReflnBlock::operator= (C++ function), [1] gemmi::ReflnBlock::refln_loop (C++ member) gemmi::ReflnBlock::ReflnBlock (C++ function), [1], [2] gemmi::ReflnBlock::spacegroup (C++ member) gemmi::ReflnBlock::tag_offset (C++ function) gemmi::ReflnBlock::use_unmerged (C++ function) gemmi::ReflnBlock::wavelength (C++ member) gemmi::ReflnBlock::wavelength_count (C++ member) gemmi::ReflnDataProxy (C++ struct) gemmi::ReflnDataProxy::column_index (C++ function) gemmi::ReflnDataProxy::get_hkl (C++ function) gemmi::ReflnDataProxy::get_int (C++ function) gemmi::ReflnDataProxy::get_num (C++ function) gemmi::ReflnDataProxy::hkl_cols_ (C++ member) gemmi::ReflnDataProxy::loop (C++ function) gemmi::ReflnDataProxy::num_type (C++ type) gemmi::ReflnDataProxy::rb_ (C++ member) gemmi::ReflnDataProxy::ReflnDataProxy (C++ function) gemmi::ReflnDataProxy::size (C++ function) gemmi::ReflnDataProxy::spacegroup (C++ function) gemmi::ReflnDataProxy::stride (C++ function) gemmi::ReflnDataProxy::unit_cell (C++ function) gemmi::refmac_radius_for_bulk_solvent (C++ function) gemmi::remove_alternative_conformations (C++ function), [1] gemmi::remove_anisou (C++ function), [1] gemmi::remove_appendix_from_column_names (C++ function) gemmi::remove_empty_children (C++ function), [1] gemmi::remove_entity_types (C++ function) gemmi::remove_hydrogens (C++ function), [1] gemmi::remove_ligands_and_waters (C++ function), [1] gemmi::remove_not_selected (C++ function) gemmi::remove_waters (C++ function), [1] gemmi::rename_atom_names (C++ function) gemmi::rename_chain (C++ function) gemmi::rename_residues (C++ function) gemmi::replace_all (C++ function) gemmi::replace_d_fraction_with_altlocs (C++ function) gemmi::replace_deuterium_with_fraction (C++ function) gemmi::Residue (C++ struct), [1] gemmi::Residue::atoms (C++ member), [1] gemmi::Residue::child_type (C++ type), [1] gemmi::Residue::children (C++ function), [1], [2], [3] gemmi::Residue::empty_copy (C++ function), [1] gemmi::Residue::entity_id (C++ member), [1] gemmi::Residue::entity_type (C++ member), [1] gemmi::Residue::find_atom (C++ function), [1], [2], [3] gemmi::Residue::find_atom_iter (C++ function), [1] gemmi::Residue::find_by_element (C++ function), [1] gemmi::Residue::first_conformer (C++ function), [1], [2], [3] gemmi::Residue::flag (C++ member), [1] gemmi::Residue::get (C++ function), [1] gemmi::Residue::get_c (C++ function), [1] gemmi::Residue::get_ca (C++ function), [1] gemmi::Residue::get_n (C++ function), [1] gemmi::Residue::get_o (C++ function), [1] gemmi::Residue::get_o3prim (C++ function), [1] gemmi::Residue::get_p (C++ function), [1] gemmi::Residue::group_idx (C++ member), [1] gemmi::Residue::het_flag (C++ member), [1] gemmi::Residue::is_water (C++ function), [1] gemmi::Residue::label_seq (C++ member), [1] gemmi::Residue::OptionalNum (C++ type), [1] gemmi::Residue::Residue (C++ function), [1], [2], [3] gemmi::Residue::same_conformer (C++ function), [1] gemmi::Residue::sifts_unp (C++ member), [1] gemmi::Residue::sole_atom (C++ function), [1] gemmi::Residue::ss_from_file (C++ member), [1] gemmi::Residue::strand_sense_from_file (C++ member), [1] gemmi::Residue::subchain (C++ member), [1] gemmi::Residue::what (C++ function), [1] gemmi::ResidueGroup (C++ struct), [1] gemmi::ResidueGroup::by_resname (C++ function), [1] gemmi::ResidueGroup::remove_residue (C++ function), [1] gemmi::ResidueGroup::ResidueGroup (C++ function), [1], [2], [3] gemmi::ResidueId (C++ struct) gemmi::ResidueId::group_key (C++ function) gemmi::ResidueId::matches (C++ function) gemmi::ResidueId::matches_noseg (C++ function) gemmi::ResidueId::name (C++ member) gemmi::ResidueId::operator== (C++ function) gemmi::ResidueId::segment (C++ member) gemmi::ResidueId::seqid (C++ member) gemmi::ResidueId::str (C++ function) gemmi::ResidueInfo (C++ struct) gemmi::ResidueInfo::fasta_code (C++ function) gemmi::ResidueInfo::found (C++ function) gemmi::ResidueInfo::hydrogen_count (C++ member) gemmi::ResidueInfo::is_amino_acid (C++ function) gemmi::ResidueInfo::is_buffer_or_water (C++ function) gemmi::ResidueInfo::is_dna (C++ function) gemmi::ResidueInfo::is_na_linking (C++ function) gemmi::ResidueInfo::is_nucleic_acid (C++ function) gemmi::ResidueInfo::is_peptide_linking (C++ function) gemmi::ResidueInfo::is_rna (C++ function) gemmi::ResidueInfo::is_standard (C++ function) gemmi::ResidueInfo::is_water (C++ function) gemmi::ResidueInfo::kind (C++ member) gemmi::ResidueInfo::linking_type (C++ member) gemmi::ResidueInfo::name (C++ member) gemmi::ResidueInfo::one_letter_code (C++ member) gemmi::ResidueInfo::weight (C++ member) gemmi::ResidueKind (C++ enum) gemmi::ResidueKind::AA (C++ enumerator) gemmi::ResidueKind::AAD (C++ enumerator) gemmi::ResidueKind::BUF (C++ enumerator) gemmi::ResidueKind::DNA (C++ enumerator) gemmi::ResidueKind::ELS (C++ enumerator) gemmi::ResidueKind::HOH (C++ enumerator) gemmi::ResidueKind::KET (C++ enumerator) gemmi::ResidueKind::MAA (C++ enumerator) gemmi::ResidueKind::PAA (C++ enumerator) gemmi::ResidueKind::PYR (C++ enumerator) gemmi::ResidueKind::RNA (C++ enumerator) gemmi::ResidueKind::UNKNOWN (C++ enumerator) gemmi::ResidueSpan (C++ struct), [1] gemmi::ResidueSpan::auth_seq_id_to_label (C++ function), [1] gemmi::ResidueSpan::const_ (C++ function), [1] gemmi::ResidueSpan::extract_sequence (C++ function), [1] gemmi::ResidueSpan::extreme_num (C++ function), [1] gemmi::ResidueSpan::find_residue_group (C++ function), [1], [2], [3] gemmi::ResidueSpan::first_conformer (C++ function), [1], [2], [3] gemmi::ResidueSpan::GroupingProxy (C++ struct), [1] gemmi::ResidueSpan::GroupingProxy::begin (C++ function), [1] gemmi::ResidueSpan::GroupingProxy::end (C++ function), [1] gemmi::ResidueSpan::GroupingProxy::iterator (C++ type), [1] gemmi::ResidueSpan::GroupingProxy::span (C++ member), [1] gemmi::ResidueSpan::label_seq_id_to_auth (C++ function), [1] gemmi::ResidueSpan::length (C++ function), [1] gemmi::ResidueSpan::Parent (C++ type), [1] gemmi::ResidueSpan::residue_groups (C++ function), [1] gemmi::ResidueSpan::ResidueSpan (C++ function), [1], [2], [3], [4], [5] gemmi::ResidueSpan::subchain_id (C++ function), [1] gemmi::ResidueSs (C++ enum), [1] gemmi::ResidueSs::Coil (C++ enumerator), [1] gemmi::ResidueSs::Helix (C++ enumerator), [1] gemmi::ResidueSs::Strand (C++ enumerator), [1] gemmi::ResidueStrandSense (C++ enum), [1] gemmi::ResidueStrandSense::Antiparallel (C++ enumerator), [1] gemmi::ResidueStrandSense::First (C++ enumerator), [1] gemmi::ResidueStrandSense::NotStrand (C++ enumerator), [1] gemmi::ResidueStrandSense::Parallel (C++ enumerator), [1] gemmi::restore_full_ccd_codes (C++ function) gemmi::Restraints (C++ struct) gemmi::Restraints::Angle (C++ struct) gemmi::Restraints::Angle::esd (C++ member) gemmi::Restraints::Angle::id1 (C++ member) gemmi::Restraints::Angle::id2 (C++ member) gemmi::Restraints::Angle::id3 (C++ member) gemmi::Restraints::Angle::radians (C++ function) gemmi::Restraints::Angle::str (C++ function) gemmi::Restraints::Angle::value (C++ member) gemmi::Restraints::Angle::what (C++ function) gemmi::Restraints::angles (C++ member) gemmi::Restraints::are_bonded (C++ function) gemmi::Restraints::AtomId (C++ struct) gemmi::Restraints::AtomId::atom (C++ member) gemmi::Restraints::AtomId::comp (C++ member) gemmi::Restraints::AtomId::get_from (C++ function), [1] gemmi::Restraints::AtomId::operator!= (C++ function), [1] gemmi::Restraints::AtomId::operator< (C++ function) gemmi::Restraints::AtomId::operator== (C++ function), [1] gemmi::Restraints::Bond (C++ struct) gemmi::Restraints::Bond::aromatic (C++ member) gemmi::Restraints::Bond::distance (C++ function) gemmi::Restraints::Bond::esd (C++ member) gemmi::Restraints::Bond::esd_nucleus (C++ member) gemmi::Restraints::Bond::id1 (C++ member) gemmi::Restraints::Bond::id2 (C++ member) gemmi::Restraints::Bond::lexicographic_str (C++ function) gemmi::Restraints::Bond::ordinal (C++ member) gemmi::Restraints::Bond::other (C++ function) gemmi::Restraints::Bond::stereo_config (C++ member) gemmi::Restraints::Bond::str (C++ function) gemmi::Restraints::Bond::type (C++ member) gemmi::Restraints::Bond::value (C++ member) gemmi::Restraints::Bond::value_nucleus (C++ member) gemmi::Restraints::Bond::what (C++ function) gemmi::Restraints::bonds (C++ member) gemmi::Restraints::chiral_abs_volume (C++ function) gemmi::Restraints::Chirality (C++ struct) gemmi::Restraints::Chirality::id1 (C++ member) gemmi::Restraints::Chirality::id2 (C++ member) gemmi::Restraints::Chirality::id3 (C++ member) gemmi::Restraints::Chirality::id_ctr (C++ member) gemmi::Restraints::Chirality::is_wrong (C++ function) gemmi::Restraints::Chirality::sign (C++ member) gemmi::Restraints::Chirality::str (C++ function) gemmi::Restraints::Chirality::what (C++ function) gemmi::Restraints::chirs (C++ member) gemmi::Restraints::DistanceOf (C++ enum) gemmi::Restraints::DistanceOf::ElectronCloud (C++ enumerator) gemmi::Restraints::DistanceOf::Nucleus (C++ enumerator) gemmi::Restraints::empty (C++ function) gemmi::Restraints::find_angle (C++ function), [1] gemmi::Restraints::find_bond (C++ function), [1] gemmi::Restraints::find_chir (C++ function), [1] gemmi::Restraints::find_shortest_path (C++ function) gemmi::Restraints::find_torsion (C++ function), [1] gemmi::Restraints::first_bonded_atom (C++ function) gemmi::Restraints::get_angle (C++ function) gemmi::Restraints::get_bond (C++ function) gemmi::Restraints::get_or_add_plane (C++ function) gemmi::Restraints::get_plane (C++ function) gemmi::Restraints::lexicographic_str (C++ function) gemmi::Restraints::Plane (C++ struct) gemmi::Restraints::Plane::esd (C++ member) gemmi::Restraints::Plane::ids (C++ member) gemmi::Restraints::Plane::label (C++ member) gemmi::Restraints::Plane::str (C++ function) gemmi::Restraints::Plane::what (C++ function) gemmi::Restraints::planes (C++ member) gemmi::Restraints::rename_atom (C++ function) gemmi::Restraints::Torsion (C++ struct) gemmi::Restraints::Torsion::esd (C++ member) gemmi::Restraints::Torsion::id1 (C++ member) gemmi::Restraints::Torsion::id2 (C++ member) gemmi::Restraints::Torsion::id3 (C++ member) gemmi::Restraints::Torsion::id4 (C++ member) gemmi::Restraints::Torsion::label (C++ member) gemmi::Restraints::Torsion::period (C++ member) gemmi::Restraints::Torsion::str (C++ function) gemmi::Restraints::Torsion::value (C++ member) gemmi::Restraints::Torsion::what (C++ function) gemmi::Restraints::torsions (C++ member) gemmi::rot_as_mat33 (C++ function), [1] gemmi::rotate_about_axis (C++ function) gemmi::round_with_small_factorization (C++ function), [1] gemmi::rtrim_cstr (C++ function) gemmi::rtrim_str (C++ function) gemmi::Scaling (C++ struct) gemmi::Scaling::b_sol (C++ member) gemmi::Scaling::b_star (C++ member) gemmi::Scaling::calculate_r_factor (C++ function) gemmi::Scaling::cell (C++ member) gemmi::Scaling::compute_value (C++ function) gemmi::Scaling::compute_value_and_derivatives (C++ function) gemmi::Scaling::constraint_matrix (C++ member) gemmi::Scaling::fit_b_star_approximately (C++ function) gemmi::Scaling::fit_isotropic_b_approximately (C++ function) gemmi::Scaling::fit_parameters (C++ function) gemmi::Scaling::fix_b_sol (C++ member) gemmi::Scaling::fix_k_sol (C++ member) gemmi::Scaling::get_b_overall (C++ function) gemmi::Scaling::get_fcalc (C++ function) gemmi::Scaling::get_overall_scale_factor (C++ function) gemmi::Scaling::get_parameters (C++ function) gemmi::Scaling::get_solvent_scale (C++ function) gemmi::Scaling::k_overall (C++ member) gemmi::Scaling::k_sol (C++ member) gemmi::Scaling::lsq_k_overall (C++ function) gemmi::Scaling::Point (C++ struct) gemmi::Scaling::Point::fcmol (C++ member) gemmi::Scaling::Point::fmask (C++ member) gemmi::Scaling::Point::fobs (C++ member) gemmi::Scaling::Point::get_weight (C++ function) gemmi::Scaling::Point::get_x (C++ function) gemmi::Scaling::Point::get_y (C++ function) gemmi::Scaling::Point::hkl (C++ member) gemmi::Scaling::Point::sigma (C++ member) gemmi::Scaling::Point::stol2 (C++ member) gemmi::Scaling::points (C++ member) gemmi::Scaling::prepare_points (C++ function) gemmi::Scaling::scale_data (C++ function) gemmi::Scaling::scale_value (C++ function) gemmi::Scaling::Scaling (C++ function) gemmi::Scaling::set_b_overall (C++ function) gemmi::Scaling::set_parameters (C++ function), [1] gemmi::Scaling::use_solvent (C++ member) gemmi::SecondaryStructure (C++ enum) gemmi::SecondaryStructure::Bend (C++ enumerator) gemmi::SecondaryStructure::Break (C++ enumerator) gemmi::SecondaryStructure::Bridge (C++ enumerator) gemmi::SecondaryStructure::Helix_3 (C++ enumerator) gemmi::SecondaryStructure::Helix_4 (C++ enumerator) gemmi::SecondaryStructure::Helix_5 (C++ enumerator) gemmi::SecondaryStructure::Helix_PP (C++ enumerator) gemmi::SecondaryStructure::Loop (C++ enumerator) gemmi::SecondaryStructure::Strand (C++ enumerator) gemmi::SecondaryStructure::Turn (C++ enumerator) gemmi::SecondaryStructureInfo (C++ struct) gemmi::SecondaryStructureInfo::add_bridge (C++ function) gemmi::SecondaryStructureInfo::antiparallel_bridges (C++ member) gemmi::SecondaryStructureInfo::break_partners (C++ member) gemmi::SecondaryStructureInfo::get_helix_position (C++ function) gemmi::SecondaryStructureInfo::has_break (C++ member) gemmi::SecondaryStructureInfo::has_bridges (C++ function) gemmi::SecondaryStructureInfo::helix_positions (C++ member) gemmi::SecondaryStructureInfo::nturn_acceptor (C++ member) gemmi::SecondaryStructureInfo::parallel_bridges (C++ member) gemmi::SecondaryStructureInfo::set_helix_position (C++ function) gemmi::SecondaryStructureInfo::ss_type (C++ member) gemmi::seitz_to_op (C++ function) gemmi::select_atoms (C++ function) gemmi::Selection (C++ struct) gemmi::Selection::add_matching_children (C++ function), [1] gemmi::Selection::altlocs (C++ member) gemmi::Selection::atom_flags (C++ member) gemmi::Selection::atom_inequalities (C++ member) gemmi::Selection::atom_names (C++ member) gemmi::Selection::AtomInequality (C++ struct) gemmi::Selection::AtomInequality::matches (C++ function) gemmi::Selection::AtomInequality::property (C++ member) gemmi::Selection::AtomInequality::relation (C++ member) gemmi::Selection::AtomInequality::str (C++ function) gemmi::Selection::AtomInequality::value (C++ member) gemmi::Selection::atoms (C++ function) gemmi::Selection::chain_ids (C++ member) gemmi::Selection::chains (C++ function) gemmi::Selection::copy_selection (C++ function) gemmi::Selection::elements (C++ member) gemmi::Selection::entity_types (C++ member) gemmi::Selection::et_flags (C++ member) gemmi::Selection::first (C++ function) gemmi::Selection::first_in_model (C++ function) gemmi::Selection::FlagList (C++ struct) gemmi::Selection::FlagList::has (C++ function) gemmi::Selection::FlagList::pattern (C++ member) gemmi::Selection::from_seqid (C++ member) gemmi::Selection::List (C++ struct) gemmi::Selection::List::all (C++ member) gemmi::Selection::List::has (C++ function) gemmi::Selection::List::inverted (C++ member) gemmi::Selection::List::list (C++ member) gemmi::Selection::List::str (C++ function) gemmi::Selection::matches (C++ function), [1], [2], [3], [4], [5] gemmi::Selection::mdl (C++ member) gemmi::Selection::models (C++ function) gemmi::Selection::remove_not_selected (C++ function), [1] gemmi::Selection::remove_selected (C++ function), [1] gemmi::Selection::residue_flags (C++ member) gemmi::Selection::residue_names (C++ member) gemmi::Selection::residues (C++ function) gemmi::Selection::Selection (C++ function), [1] gemmi::Selection::SequenceId (C++ struct) gemmi::Selection::SequenceId::compare (C++ function) gemmi::Selection::SequenceId::empty (C++ function) gemmi::Selection::SequenceId::icode (C++ member) gemmi::Selection::SequenceId::seqnum (C++ member) gemmi::Selection::SequenceId::str (C++ function) gemmi::Selection::set_atom_flags (C++ function) gemmi::Selection::set_residue_flags (C++ function) gemmi::Selection::str (C++ function) gemmi::Selection::to_seqid (C++ member) gemmi::SellingVector (C++ struct) gemmi::SellingVector::cell_parameters (C++ function) gemmi::SellingVector::g6_parameters (C++ function) gemmi::SellingVector::get_cell (C++ function) gemmi::SellingVector::gruber (C++ function) gemmi::SellingVector::is_reduced (C++ function) gemmi::SellingVector::reduce (C++ function) gemmi::SellingVector::reduce_step (C++ function) gemmi::SellingVector::s (C++ member) gemmi::SellingVector::SellingVector (C++ function), [1], [2], [3] gemmi::SellingVector::sort (C++ function) gemmi::SellingVector::sum_b_squared (C++ function) gemmi::SeqId (C++ struct) gemmi::SeqId::has_icode (C++ function) gemmi::SeqId::icode (C++ member) gemmi::SeqId::num (C++ member) gemmi::SeqId::operator!= (C++ function) gemmi::SeqId::operator< (C++ function) gemmi::SeqId::operator<= (C++ function) gemmi::SeqId::operator== (C++ function) gemmi::SeqId::OptionalNum (C++ type) gemmi::SeqId::SeqId (C++ function), [1], [2], [3] gemmi::SeqId::str (C++ function) gemmi::seqid_from_mmdb (C++ function) gemmi::seqid_matches_seqres (C++ function) gemmi::sequence_kind (C++ function) gemmi::serialize (C++ function), [1] gemmi::set_deuterium_fraction_of_hydrogens (C++ function) gemmi::set_is_metal (C++ function) gemmi::set_margin_around (C++ function) gemmi::set_mmdb_seqres (C++ function) gemmi::set_seqid_in_mmdb (C++ function) gemmi::setup_entities (C++ function) gemmi::setup_for_crd (C++ function) gemmi::Sheet (C++ struct) gemmi::Sheet::name (C++ member) gemmi::Sheet::Sheet (C++ function), [1] gemmi::Sheet::Strand (C++ struct) gemmi::Sheet::Strand::end (C++ member) gemmi::Sheet::Strand::hbond_atom1 (C++ member) gemmi::Sheet::Strand::hbond_atom2 (C++ member) gemmi::Sheet::Strand::name (C++ member) gemmi::Sheet::Strand::sense (C++ member) gemmi::Sheet::Strand::start (C++ member) gemmi::Sheet::strands (C++ member) gemmi::shorten_ccd_codes (C++ function) gemmi::shorten_chain_names (C++ function) gemmi::SiftsUnpResidue (C++ struct) gemmi::SiftsUnpResidue::acc_index (C++ member) gemmi::SiftsUnpResidue::num (C++ member) gemmi::SiftsUnpResidue::res (C++ member) gemmi::simple_atoi (C++ function) gemmi::skip_blank (C++ function) gemmi::skip_word (C++ function) gemmi::SmallStructure (C++ struct) gemmi::SmallStructure::atom_types (C++ member) gemmi::SmallStructure::AtomType (C++ struct) gemmi::SmallStructure::AtomType::charge (C++ member) gemmi::SmallStructure::AtomType::dispersion_imag (C++ member) gemmi::SmallStructure::AtomType::dispersion_real (C++ member) gemmi::SmallStructure::AtomType::element (C++ member) gemmi::SmallStructure::AtomType::symbol (C++ member) gemmi::SmallStructure::cell (C++ member) gemmi::SmallStructure::change_occupancies_to_crystallographic (C++ function) gemmi::SmallStructure::check_spacegroup (C++ function) gemmi::SmallStructure::determine_and_set_spacegroup (C++ function) gemmi::SmallStructure::determine_spacegroup_from (C++ function) gemmi::SmallStructure::get_all_unit_cell_sites (C++ function) gemmi::SmallStructure::get_atom_type (C++ function) gemmi::SmallStructure::name (C++ member) gemmi::SmallStructure::present_elements (C++ function) gemmi::SmallStructure::remove_hydrogens (C++ function) gemmi::SmallStructure::setup_cell_images (C++ function) gemmi::SmallStructure::Site (C++ struct) gemmi::SmallStructure::Site::aniso (C++ member) gemmi::SmallStructure::Site::charge (C++ member) gemmi::SmallStructure::Site::disorder_group (C++ member) gemmi::SmallStructure::Site::element (C++ member) gemmi::SmallStructure::Site::element_and_charge_symbol (C++ function) gemmi::SmallStructure::Site::fract (C++ member) gemmi::SmallStructure::Site::label (C++ member) gemmi::SmallStructure::Site::occ (C++ member) gemmi::SmallStructure::Site::orth (C++ function) gemmi::SmallStructure::Site::type_symbol (C++ member) gemmi::SmallStructure::Site::u_iso (C++ member) gemmi::SmallStructure::sites (C++ member) gemmi::SmallStructure::spacegroup (C++ member) gemmi::SmallStructure::spacegroup_hall (C++ member) gemmi::SmallStructure::spacegroup_hm (C++ member) gemmi::SmallStructure::spacegroup_number (C++ member) gemmi::SmallStructure::symops (C++ member) gemmi::SmallStructure::wavelength (C++ member) gemmi::SmartsMatch (C++ type) gemmi::SMat33 (C++ struct) gemmi::SMat33::added_kI (C++ function) gemmi::SMat33::all_zero (C++ function) gemmi::SMat33::as_mat33 (C++ function) gemmi::SMat33::calculate_eigenvalues (C++ function) gemmi::SMat33::determinant (C++ function) gemmi::SMat33::elements_pdb (C++ function) gemmi::SMat33::elements_voigt (C++ function) gemmi::SMat33::inverse (C++ function) gemmi::SMat33::inverse_ (C++ function) gemmi::SMat33::multiply (C++ function) gemmi::SMat33::nonzero (C++ function) gemmi::SMat33::operator+ (C++ function) gemmi::SMat33::operator- (C++ function) gemmi::SMat33::r_u_r (C++ function), [1] gemmi::SMat33::scale (C++ function) gemmi::SMat33::scaled (C++ function) gemmi::SMat33::trace (C++ function) gemmi::SMat33::transformed_by (C++ function) gemmi::SMat33::u11 (C++ member) gemmi::SMat33::u12 (C++ member) gemmi::SMat33::u13 (C++ member) gemmi::SMat33::u22 (C++ member) gemmi::SMat33::u23 (C++ member) gemmi::SMat33::u33 (C++ member) gemmi::SMat33::unchecked_ref (C++ function) gemmi::software_classification_from_string (C++ function) gemmi::software_classification_to_string (C++ function) gemmi::SoftwareItem (C++ struct) gemmi::SoftwareItem::Classification (C++ enum) gemmi::SoftwareItem::classification (C++ member) gemmi::SoftwareItem::Classification::DataCollection (C++ enumerator) gemmi::SoftwareItem::Classification::DataExtraction (C++ enumerator) gemmi::SoftwareItem::Classification::DataProcessing (C++ enumerator) gemmi::SoftwareItem::Classification::DataReduction (C++ enumerator) gemmi::SoftwareItem::Classification::DataScaling (C++ enumerator) gemmi::SoftwareItem::Classification::ModelBuilding (C++ enumerator) gemmi::SoftwareItem::Classification::Phasing (C++ enumerator) gemmi::SoftwareItem::Classification::Refinement (C++ enumerator) gemmi::SoftwareItem::Classification::Unspecified (C++ enumerator) gemmi::SoftwareItem::contact_author (C++ member) gemmi::SoftwareItem::contact_author_email (C++ member) gemmi::SoftwareItem::date (C++ member) gemmi::SoftwareItem::description (C++ member) gemmi::SoftwareItem::name (C++ member) gemmi::SoftwareItem::version (C++ member) gemmi::SolventMasker (C++ struct) gemmi::SolventMasker::atomic_radii_set (C++ member) gemmi::SolventMasker::clear (C++ function) gemmi::SolventMasker::constant_r (C++ member) gemmi::SolventMasker::ignore_hydrogen (C++ member) gemmi::SolventMasker::ignore_zero_occupancy_atoms (C++ member) gemmi::SolventMasker::invert (C++ function) gemmi::SolventMasker::island_min_volume (C++ member) gemmi::SolventMasker::mask_points (C++ function), [1] gemmi::SolventMasker::put_mask_on_grid (C++ function) gemmi::SolventMasker::remove_islands (C++ function) gemmi::SolventMasker::requested_spacing (C++ member) gemmi::SolventMasker::rprobe (C++ member) gemmi::SolventMasker::rshrink (C++ member) gemmi::SolventMasker::set_radii (C++ function) gemmi::SolventMasker::set_to_zero (C++ function) gemmi::SolventMasker::shrink (C++ function) gemmi::SolventMasker::SolventMasker (C++ function) gemmi::SolventMasker::symmetrize (C++ function) gemmi::SolventMasker::use_atom_occupancy (C++ member) gemmi::SpaceGroup (C++ struct) gemmi::SpaceGroup::basisop (C++ function) gemmi::SpaceGroup::basisop_idx (C++ member) gemmi::SpaceGroup::basisop_str (C++ function) gemmi::SpaceGroup::ccp4 (C++ member) gemmi::SpaceGroup::ccp4_lattice_type (C++ function) gemmi::SpaceGroup::centred_to_primitive (C++ function) gemmi::SpaceGroup::centring_type (C++ function) gemmi::SpaceGroup::change_of_hand_op (C++ function) gemmi::SpaceGroup::crystal_system (C++ function) gemmi::SpaceGroup::crystal_system_str (C++ function) gemmi::SpaceGroup::ext (C++ member) gemmi::SpaceGroup::hall (C++ member) gemmi::SpaceGroup::hm (C++ member) gemmi::SpaceGroup::is_centrosymmetric (C++ function) gemmi::SpaceGroup::is_enantiomorphic (C++ function) gemmi::SpaceGroup::is_reference_setting (C++ function) gemmi::SpaceGroup::is_sohncke (C++ function) gemmi::SpaceGroup::is_symmorphic (C++ function) gemmi::SpaceGroup::laue_class (C++ function) gemmi::SpaceGroup::laue_str (C++ function) gemmi::SpaceGroup::monoclinic_unique_axis (C++ function) gemmi::SpaceGroup::number (C++ member) gemmi::SpaceGroup::operations (C++ function) gemmi::SpaceGroup::pdb_name (C++ function) gemmi::SpaceGroup::point_group (C++ function) gemmi::SpaceGroup::point_group_hm (C++ function) gemmi::SpaceGroup::qualifier (C++ member) gemmi::SpaceGroup::short_name (C++ function) gemmi::SpaceGroup::xhm (C++ function) gemmi::spacegroup_tables (C++ struct) gemmi::spacegroup_tables::alt_names (C++ member) gemmi::spacegroup_tables::ccp4_hkl_asu (C++ member) gemmi::spacegroup_tables::main (C++ member) gemmi::SpaceGroupAltName (C++ struct) gemmi::SpaceGroupAltName::ext (C++ member) gemmi::SpaceGroupAltName::hm (C++ member) gemmi::SpaceGroupAltName::pos (C++ member) gemmi::Span (C++ struct) gemmi::Span::at (C++ function), [1] gemmi::Span::back (C++ function), [1] gemmi::Span::begin (C++ function), [1] gemmi::Span::begin_ (C++ member) gemmi::Span::children (C++ function), [1] gemmi::Span::const_iterator (C++ type) gemmi::Span::element_type (C++ type) gemmi::Span::empty (C++ function) gemmi::Span::end (C++ function), [1] gemmi::Span::front (C++ function), [1] gemmi::Span::iterator (C++ type) gemmi::Span::operator bool (C++ function) gemmi::Span::operator[] (C++ function), [1] gemmi::Span::set_begin (C++ function) gemmi::Span::set_size (C++ function) gemmi::Span::size (C++ function) gemmi::Span::size_ (C++ member) gemmi::Span::Span (C++ function), [1], [2] gemmi::Span::sub (C++ function) gemmi::Span::subspan (C++ function), [1] gemmi::Span::value_type (C++ type) gemmi::split_centering_vectors (C++ function) gemmi::split_chains_by_segments (C++ function) gemmi::split_element_and_charge (C++ function) gemmi::split_str (C++ function) gemmi::split_str_into (C++ function) gemmi::split_str_into_multi (C++ function) gemmi::split_str_multi (C++ function) gemmi::sq (C++ function), [1] gemmi::standardize_crystal_frame (C++ function) gemmi::starts_with (C++ function), [1] gemmi::store_deuterium_as_fraction (C++ function) gemmi::strcpy_to_mmdb (C++ function) gemmi::StrideIter (C++ type) gemmi::StrideIterPolicy (C++ class) gemmi::StrideIterPolicy::const_policy (C++ type) gemmi::StrideIterPolicy::cur_ (C++ member) gemmi::StrideIterPolicy::decrement (C++ function) gemmi::StrideIterPolicy::dereference (C++ function) gemmi::StrideIterPolicy::equal (C++ function) gemmi::StrideIterPolicy::increment (C++ function) gemmi::StrideIterPolicy::offset_ (C++ member) gemmi::StrideIterPolicy::operator const_policy (C++ function) gemmi::StrideIterPolicy::reference (C++ type) gemmi::StrideIterPolicy::stride_ (C++ member) gemmi::StrideIterPolicy::StrideIterPolicy (C++ function), [1] gemmi::StrideIterPolicy::value_type (C++ type) gemmi::string_append_sep (C++ function) gemmi::string_to_int (C++ function), [1] gemmi::StructSite (C++ struct) gemmi::StructSite::details (C++ member) gemmi::StructSite::evidence_code (C++ member) gemmi::StructSite::Member (C++ struct) gemmi::StructSite::Member::auth (C++ member) gemmi::StructSite::Member::details (C++ member) gemmi::StructSite::Member::label_alt_id (C++ member) gemmi::StructSite::Member::label_asym_id (C++ member) gemmi::StructSite::Member::label_atom_id (C++ member) gemmi::StructSite::Member::label_comp_id (C++ member) gemmi::StructSite::Member::label_seq (C++ member) gemmi::StructSite::Member::residue_num (C++ member) gemmi::StructSite::Member::symmetry (C++ member) gemmi::StructSite::members (C++ member) gemmi::StructSite::name (C++ member) gemmi::StructSite::residue (C++ member) gemmi::StructSite::residue_count (C++ member) gemmi::StructSite::StructSite (C++ function), [1] gemmi::Structure (C++ struct), [1] gemmi::Structure::add_conect (C++ function), [1] gemmi::Structure::add_conect_one_way (C++ function), [1] gemmi::Structure::assemblies (C++ member), [1] gemmi::Structure::cell (C++ member), [1] gemmi::Structure::chemcomps (C++ member), [1] gemmi::Structure::child_type (C++ type), [1] gemmi::Structure::children (C++ function), [1], [2], [3] gemmi::Structure::cispeps (C++ member), [1] gemmi::Structure::conect_map (C++ member), [1] gemmi::Structure::connections (C++ member), [1] gemmi::Structure::empty_copy (C++ function), [1] gemmi::Structure::entities (C++ member), [1] gemmi::Structure::find_assembly (C++ function), [1] gemmi::Structure::find_connection (C++ function), [1] gemmi::Structure::find_connection_by_cra (C++ function), [1] gemmi::Structure::find_connection_by_name (C++ function), [1], [2], [3] gemmi::Structure::find_model (C++ function), [1], [2], [3] gemmi::Structure::find_or_add_model (C++ function), [1] gemmi::Structure::find_spacegroup (C++ function), [1] gemmi::Structure::first_model (C++ function), [1], [2], [3] gemmi::Structure::get_entity (C++ function), [1], [2], [3] gemmi::Structure::get_entity_of (C++ function), [1], [2], [3] gemmi::Structure::get_info (C++ function), [1] gemmi::Structure::get_ncs_multiplier (C++ function), [1] gemmi::Structure::has_d_fraction (C++ member), [1] gemmi::Structure::has_origx (C++ member), [1] gemmi::Structure::helices (C++ member), [1] gemmi::Structure::info (C++ member), [1] gemmi::Structure::input_format (C++ member), [1] gemmi::Structure::merge_chain_parts (C++ function), [1] gemmi::Structure::meta (C++ member), [1] gemmi::Structure::mod_residues (C++ member), [1] gemmi::Structure::models (C++ member), [1] gemmi::Structure::name (C++ member), [1] gemmi::Structure::ncs (C++ member), [1] gemmi::Structure::ncs_given_count (C++ function), [1] gemmi::Structure::ncs_not_expanded (C++ function), [1] gemmi::Structure::non_ascii_line (C++ member), [1] gemmi::Structure::origx (C++ member), [1] gemmi::Structure::raw_remarks (C++ member), [1] gemmi::Structure::remove_empty_chains (C++ function), [1] gemmi::Structure::renumber_models (C++ function), [1] gemmi::Structure::resolution (C++ member), [1] gemmi::Structure::setup_cell_images (C++ function), [1] gemmi::Structure::sheets (C++ member), [1] gemmi::Structure::shortened_ccd_codes (C++ member), [1] gemmi::Structure::sites (C++ member), [1] gemmi::Structure::spacegroup_hm (C++ member), [1] gemmi::Structure::ter_status (C++ member), [1] gemmi::Structure::what (C++ function), [1] gemmi::StructureFactorCalculator (C++ class) gemmi::StructureFactorCalculator::addends (C++ member) gemmi::StructureFactorCalculator::calculate_mb_z (C++ function) gemmi::StructureFactorCalculator::calculate_sf_from_atom (C++ function) gemmi::StructureFactorCalculator::calculate_sf_from_atom_sf (C++ function) gemmi::StructureFactorCalculator::calculate_sf_from_model (C++ function) gemmi::StructureFactorCalculator::calculate_sf_from_small_structure (C++ function) gemmi::StructureFactorCalculator::cell_ (C++ member) gemmi::StructureFactorCalculator::coef_type (C++ type) gemmi::StructureFactorCalculator::dwf_aniso (C++ function), [1] gemmi::StructureFactorCalculator::dwf_iso (C++ function), [1] gemmi::StructureFactorCalculator::get_scattering_factor (C++ function) gemmi::StructureFactorCalculator::mott_bethe_factor (C++ function) gemmi::StructureFactorCalculator::scattering_factors_ (C++ member) gemmi::StructureFactorCalculator::set_stol2_and_scattering_factors (C++ function) gemmi::StructureFactorCalculator::stol2_ (C++ member) gemmi::StructureFactorCalculator::StructureFactorCalculator (C++ function) gemmi::superpose_positions (C++ function) gemmi::SupResult (C++ struct) gemmi::SupResult::center1 (C++ member) gemmi::SupResult::center2 (C++ member) gemmi::SupResult::count (C++ member) gemmi::SupResult::rmsd (C++ member) gemmi::SupResult::transform (C++ member) gemmi::SupSelect (C++ enum) gemmi::SupSelect::All (C++ enumerator) gemmi::SupSelect::CaP (C++ enumerator) gemmi::SupSelect::MainChain (C++ enumerator) gemmi::swap_eight_bytes (C++ function) gemmi::swap_four_bytes (C++ function) gemmi::swap_two_bytes (C++ function) gemmi::symops_from_hall (C++ function) gemmi::TlsGroup (C++ struct) gemmi::TlsGroup::id (C++ member) gemmi::TlsGroup::L (C++ member) gemmi::TlsGroup::num_id (C++ member) gemmi::TlsGroup::origin (C++ member) gemmi::TlsGroup::S (C++ member) gemmi::TlsGroup::Selection (C++ struct) gemmi::TlsGroup::Selection::chain (C++ member) gemmi::TlsGroup::Selection::details (C++ member) gemmi::TlsGroup::Selection::res_begin (C++ member) gemmi::TlsGroup::Selection::res_end (C++ member) gemmi::TlsGroup::selections (C++ member) gemmi::TlsGroup::T (C++ member) gemmi::to_chars_z (C++ function), [1] gemmi::to_lower (C++ function) gemmi::to_str (C++ function) gemmi::to_str_prec (C++ function) gemmi::to_upper (C++ function) gemmi::Topo (C++ struct) gemmi::Topo::Angle (C++ struct) gemmi::Topo::Angle::atoms (C++ member) gemmi::Topo::Angle::calculate (C++ function) gemmi::Topo::Angle::calculate_z (C++ function) gemmi::Topo::Angle::restr (C++ member) gemmi::Topo::angle_index (C++ member) gemmi::Topo::angles (C++ member) gemmi::Topo::apply_all_restraints (C++ function) gemmi::Topo::apply_restraints (C++ function) gemmi::Topo::apply_restraints_from_link (C++ function) gemmi::Topo::Bond (C++ struct) gemmi::Topo::Bond::asu (C++ member) gemmi::Topo::Bond::atoms (C++ member) gemmi::Topo::Bond::calculate (C++ function) gemmi::Topo::Bond::calculate_z (C++ function) gemmi::Topo::Bond::calculate_z_ (C++ function) gemmi::Topo::Bond::restr (C++ member) gemmi::Topo::bond_index (C++ member) gemmi::Topo::bonds (C++ member) gemmi::Topo::cc_cache (C++ member) gemmi::Topo::cc_storage (C++ member) gemmi::Topo::chain_infos (C++ member) gemmi::Topo::ChainInfo (C++ struct) gemmi::Topo::ChainInfo::chain_ref (C++ member) gemmi::Topo::ChainInfo::ChainInfo (C++ function) gemmi::Topo::ChainInfo::entity_id (C++ member) gemmi::Topo::ChainInfo::group_end (C++ function) gemmi::Topo::ChainInfo::iterator (C++ type) gemmi::Topo::ChainInfo::polymer (C++ member) gemmi::Topo::ChainInfo::polymer_type (C++ member) gemmi::Topo::ChainInfo::res_infos (C++ member) gemmi::Topo::ChainInfo::subchain_name (C++ member) gemmi::Topo::Chirality (C++ struct) gemmi::Topo::Chirality::atoms (C++ member) gemmi::Topo::Chirality::calculate (C++ function) gemmi::Topo::Chirality::calculate_z (C++ function) gemmi::Topo::Chirality::check (C++ function) gemmi::Topo::Chirality::restr (C++ member) gemmi::Topo::chirs (C++ member) gemmi::Topo::create_indices (C++ function) gemmi::Topo::extras (C++ member) gemmi::Topo::FinalChemComp (C++ struct) gemmi::Topo::FinalChemComp::altloc (C++ member) gemmi::Topo::FinalChemComp::cc (C++ member) gemmi::Topo::find_polymer_link (C++ function) gemmi::Topo::find_resinfo (C++ function) gemmi::Topo::first_bond_in_link (C++ function) gemmi::Topo::get_chirality (C++ function) gemmi::Topo::has_atom (C++ function) gemmi::Topo::ideal_chiral_abs_volume (C++ function) gemmi::Topo::initialize_refmac_topology (C++ function) gemmi::Topo::Link (C++ struct) gemmi::Topo::Link::aliasing1 (C++ member) gemmi::Topo::Link::aliasing2 (C++ member) gemmi::Topo::Link::alt1 (C++ member) gemmi::Topo::Link::alt2 (C++ member) gemmi::Topo::Link::asu (C++ member) gemmi::Topo::Link::atom1_name_id (C++ member) gemmi::Topo::Link::atom2_name_id (C++ member) gemmi::Topo::Link::is_cis (C++ member) gemmi::Topo::Link::link_id (C++ member) gemmi::Topo::Link::link_rules (C++ member) gemmi::Topo::Link::res1 (C++ member) gemmi::Topo::Link::res2 (C++ member) gemmi::Topo::Link::res_distance (C++ function) gemmi::Topo::logger (C++ member) gemmi::Topo::Mod (C++ struct) gemmi::Topo::Mod::alias (C++ member) gemmi::Topo::Mod::altloc (C++ member) gemmi::Topo::Mod::id (C++ member) gemmi::Topo::Mod::operator== (C++ function) gemmi::Topo::only_bonds (C++ member) gemmi::Topo::operator= (C++ function) gemmi::Topo::Plane (C++ struct) gemmi::Topo::Plane::atoms (C++ member) gemmi::Topo::Plane::has (C++ function) gemmi::Topo::Plane::restr (C++ member) gemmi::Topo::plane_index (C++ member) gemmi::Topo::planes (C++ member) gemmi::Topo::ResInfo (C++ struct) gemmi::Topo::ResInfo::acceptor_energies (C++ member) gemmi::Topo::ResInfo::acceptors (C++ member) gemmi::Topo::ResInfo::add_mod (C++ function) gemmi::Topo::ResInfo::chemcomps (C++ member) gemmi::Topo::ResInfo::donor_energies (C++ member) gemmi::Topo::ResInfo::donors (C++ member) gemmi::Topo::ResInfo::get_final_chemcomp (C++ function) gemmi::Topo::ResInfo::mods (C++ member) gemmi::Topo::ResInfo::monomer_rules (C++ member) gemmi::Topo::ResInfo::orig_chemcomp (C++ member) gemmi::Topo::ResInfo::prev (C++ member) gemmi::Topo::ResInfo::res (C++ member) gemmi::Topo::ResInfo::ResInfo (C++ function) gemmi::Topo::RKind (C++ enum) gemmi::Topo::RKind::Angle (C++ enumerator) gemmi::Topo::RKind::Bond (C++ enumerator) gemmi::Topo::RKind::Chirality (C++ enumerator) gemmi::Topo::RKind::Plane (C++ enumerator) gemmi::Topo::RKind::Torsion (C++ enumerator) gemmi::Topo::rt_storage (C++ member) gemmi::Topo::Rule (C++ struct) gemmi::Topo::Rule::index (C++ member) gemmi::Topo::Rule::rkind (C++ member) gemmi::Topo::set_cispeps_in_structure (C++ function) gemmi::Topo::setup_connection (C++ function) gemmi::Topo::take_angle (C++ function) gemmi::Topo::take_bond (C++ function) gemmi::Topo::Topo (C++ function), [1] gemmi::Topo::Torsion (C++ struct) gemmi::Topo::Torsion::atoms (C++ member) gemmi::Topo::Torsion::calculate (C++ function) gemmi::Topo::Torsion::calculate_z (C++ function) gemmi::Topo::Torsion::restr (C++ member) gemmi::Topo::torsion_index (C++ member) gemmi::Topo::torsions (C++ member) gemmi::tran_as_vec3 (C++ function) gemmi::transcript_old_anomalous_to_standard (C++ function) gemmi::transfer_links_from_mmdb (C++ function) gemmi::transfer_links_to_mmdb (C++ function) gemmi::transfer_seqres_to_mmdb (C++ function) gemmi::Transform (C++ struct) gemmi::Transform::apply (C++ function) gemmi::Transform::approx (C++ function) gemmi::Transform::combine (C++ function) gemmi::Transform::has_nan (C++ function) gemmi::Transform::inverse (C++ function) gemmi::Transform::is_identity (C++ function) gemmi::Transform::mat (C++ member) gemmi::Transform::set_identity (C++ function) gemmi::Transform::vec (C++ member) gemmi::transform_f_phi_grid_to_map (C++ function) gemmi::transform_f_phi_grid_to_map_ (C++ function) gemmi::transform_f_phi_to_map (C++ function) gemmi::transform_f_phi_to_map2 (C++ function) gemmi::transform_map_to_f_phi (C++ function) gemmi::transform_pos_and_adp (C++ function), [1] gemmi::transform_to_assembly (C++ function) gemmi::trim_str (C++ function) gemmi::trim_to_alanine (C++ function), [1] gemmi::triplets_to_ops (C++ function) gemmi::TurnType (C++ enum) gemmi::TurnType::Turn_3 (C++ enumerator) gemmi::TurnType::Turn_4 (C++ enumerator) gemmi::TurnType::Turn_5 (C++ enumerator) gemmi::TurnType::Turn_PP (C++ enumerator) gemmi::u_to_b (C++ function) gemmi::UniqIter (C++ type) gemmi::UniqIterPolicy (C++ class) gemmi::UniqIterPolicy::const_policy (C++ type) gemmi::UniqIterPolicy::decrement (C++ function) gemmi::UniqIterPolicy::dereference (C++ function) gemmi::UniqIterPolicy::equal (C++ function) gemmi::UniqIterPolicy::increment (C++ function) gemmi::UniqIterPolicy::operator const_policy (C++ function) gemmi::UniqIterPolicy::pos_ (C++ member) gemmi::UniqIterPolicy::reference (C++ type) gemmi::UniqIterPolicy::UniqIterPolicy (C++ function), [1] gemmi::UniqIterPolicy::value_type (C++ type) gemmi::UniqIterPolicy::vec_ (C++ member) gemmi::UniqProxy (C++ struct) gemmi::UniqProxy::begin (C++ function) gemmi::UniqProxy::end (C++ function) gemmi::UniqProxy::iterator (C++ type) gemmi::UniqProxy::vec (C++ member) gemmi::UnitCell (C++ struct) gemmi::UnitCell::add_ncs_images_to_cs_images (C++ function) gemmi::UnitCell::apply_transform (C++ function) gemmi::UnitCell::ar (C++ member) gemmi::UnitCell::br (C++ member) gemmi::UnitCell::calculate_1_d2 (C++ function) gemmi::UnitCell::calculate_1_d2_double (C++ function) gemmi::UnitCell::calculate_d (C++ function) gemmi::UnitCell::calculate_matrix_B (C++ function) gemmi::UnitCell::calculate_properties (C++ function) gemmi::UnitCell::calculate_stol_sq (C++ function) gemmi::UnitCell::calculate_u_eq (C++ function) gemmi::UnitCell::changed_basis_backward (C++ function) gemmi::UnitCell::changed_basis_forward (C++ function) gemmi::UnitCell::cos_alpha (C++ function) gemmi::UnitCell::cos_alphar (C++ member) gemmi::UnitCell::cos_betar (C++ member) gemmi::UnitCell::cos_gammar (C++ member) gemmi::UnitCell::cr (C++ member) gemmi::UnitCell::cs_count (C++ member) gemmi::UnitCell::distance_sq (C++ function), [1] gemmi::UnitCell::explicit_matrices (C++ member) gemmi::UnitCell::find_nearest_image (C++ function) gemmi::UnitCell::find_nearest_pbc_image (C++ function), [1] gemmi::UnitCell::find_nearest_pbc_images (C++ function) gemmi::UnitCell::find_nearest_pbc_position (C++ function) gemmi::UnitCell::frac (C++ member) gemmi::UnitCell::fract_image (C++ function) gemmi::UnitCell::fractionalize (C++ function) gemmi::UnitCell::fractionalize_difference (C++ function) gemmi::UnitCell::get_hkl_limits (C++ function) gemmi::UnitCell::get_ncs_transforms (C++ function) gemmi::UnitCell::images (C++ member) gemmi::UnitCell::is_compatible_with_groupops (C++ function) gemmi::UnitCell::is_compatible_with_spacegroup (C++ function) gemmi::UnitCell::is_crystal (C++ function) gemmi::UnitCell::is_similar (C++ function) gemmi::UnitCell::is_special_position (C++ function), [1] gemmi::UnitCell::metric_tensor (C++ function) gemmi::UnitCell::op_as_transform (C++ function) gemmi::UnitCell::orth (C++ member) gemmi::UnitCell::orthogonalize (C++ function) gemmi::UnitCell::orthogonalize_box (C++ function) gemmi::UnitCell::orthogonalize_difference (C++ function) gemmi::UnitCell::orthogonalize_in_pbc (C++ function) gemmi::UnitCell::orthogonalize_transform (C++ function) gemmi::UnitCell::primitive_orth_matrix (C++ function) gemmi::UnitCell::reciprocal (C++ function) gemmi::UnitCell::reciprocal_metric_tensor (C++ function) gemmi::UnitCell::search_pbc_images (C++ function) gemmi::UnitCell::set (C++ function) gemmi::UnitCell::set_cell_images_from_groupops (C++ function) gemmi::UnitCell::set_cell_images_from_spacegroup (C++ function) gemmi::UnitCell::set_from_array (C++ function) gemmi::UnitCell::set_from_parameters (C++ function) gemmi::UnitCell::set_from_vectors (C++ function) gemmi::UnitCell::set_matrices_from_fract (C++ function) gemmi::UnitCell::UnitCell (C++ function), [1], [2] gemmi::UnitCell::volume (C++ member) gemmi::UnitCell::volume_per_image (C++ function) gemmi::UnitCellParameters (C++ struct) gemmi::UnitCellParameters::a (C++ member) gemmi::UnitCellParameters::alpha (C++ member) gemmi::UnitCellParameters::approx (C++ function) gemmi::UnitCellParameters::b (C++ member) gemmi::UnitCellParameters::beta (C++ member) gemmi::UnitCellParameters::c (C++ member) gemmi::UnitCellParameters::gamma (C++ member) gemmi::UnitCellParameters::operator!= (C++ function) gemmi::UnitCellParameters::operator== (C++ function) gemmi::UnitCellParameters::UnitCellParameters (C++ function), [1], [2] gemmi::unknown_tabulated_residue_idx (C++ function) gemmi::unmask_symmetry_mates (C++ function) gemmi::UnmergedHklMover (C++ struct) gemmi::UnmergedHklMover::asu_ (C++ member) gemmi::UnmergedHklMover::group_ops_ (C++ member) gemmi::UnmergedHklMover::move_to_asu (C++ function) gemmi::UnmergedHklMover::UnmergedHklMover (C++ function) gemmi::unreachable (C++ function) gemmi::unsafe_expapprox (C++ function) gemmi::update_mmcif_block (C++ function) gemmi::UpperTriangularMat33 (C++ struct) gemmi::UpperTriangularMat33::a11 (C++ member) gemmi::UpperTriangularMat33::a12 (C++ member) gemmi::UpperTriangularMat33::a13 (C++ member) gemmi::UpperTriangularMat33::a22 (C++ member) gemmi::UpperTriangularMat33::a23 (C++ member) gemmi::UpperTriangularMat33::a33 (C++ member) gemmi::UpperTriangularMat33::multiply (C++ function) gemmi::UpperTriangularMat33::operator= (C++ function) gemmi::UpperTriangularMat33::UpperTriangularMat33 (C++ function) gemmi::use_hetatm (C++ function) gemmi::validate_merged_intensities (C++ function) gemmi::validate_merged_mtz_deposition_columns (C++ function) gemmi::ValueSigma (C++ struct) gemmi::ValueSigma::operator== (C++ function) gemmi::ValueSigma::sigma (C++ member) gemmi::ValueSigma::value (C++ member) gemmi::ValueSigma::value_type (C++ type) gemmi::Variance (C++ struct) gemmi::Variance::add_point (C++ function) gemmi::Variance::for_population (C++ function) gemmi::Variance::for_sample (C++ function) gemmi::Variance::mean_x (C++ member) gemmi::Variance::n (C++ member) gemmi::Variance::sum_sq (C++ member) gemmi::Variance::Variance (C++ function), [1] gemmi::vdw_radius (C++ function) gemmi::Vec3 (C++ type) gemmi::Vec3_ (C++ struct) gemmi::Vec3_::angle (C++ function) gemmi::Vec3_::approx (C++ function) gemmi::Vec3_::at (C++ function), [1] gemmi::Vec3_::changed_magnitude (C++ function) gemmi::Vec3_::cos_angle (C++ function) gemmi::Vec3_::cross (C++ function) gemmi::Vec3_::dist (C++ function) gemmi::Vec3_::dist_sq (C++ function) gemmi::Vec3_::dot (C++ function) gemmi::Vec3_::has_nan (C++ function) gemmi::Vec3_::is_finite (C++ function) gemmi::Vec3_::length (C++ function) gemmi::Vec3_::length_sq (C++ function) gemmi::Vec3_::negated (C++ function) gemmi::Vec3_::normalized (C++ function) gemmi::Vec3_::operator* (C++ function) gemmi::Vec3_::operator*= (C++ function) gemmi::Vec3_::operator+ (C++ function) gemmi::Vec3_::operator+= (C++ function) gemmi::Vec3_::operator- (C++ function), [1] gemmi::Vec3_::operator-= (C++ function) gemmi::Vec3_::operator/ (C++ function) gemmi::Vec3_::operator/= (C++ function) gemmi::Vec3_::Vec3_ (C++ function), [1], [2] gemmi::Vec3_::x (C++ member) gemmi::Vec3_::y (C++ member) gemmi::Vec3_::z (C++ member) gemmi::Vec3f (C++ type) gemmi::Vec6 (C++ type) gemmi::vec6_dot (C++ function) gemmi::vector_end_ptr (C++ function), [1] gemmi::vector_insert_columns (C++ function) gemmi::vector_move_extend (C++ function) gemmi::vector_remove_column (C++ function) gemmi::vector_remove_if (C++ function) gemmi::write_cispeps (C++ function) gemmi::write_minimal_pdb (C++ function) gemmi::write_ncs_oper (C++ function) gemmi::write_pdb (C++ function) gemmi::write_staraniso_b_in_mmcif (C++ function) gemmi::write_struct_conn (C++ function) gemmi::write_struct_sites (C++ function) gemmi::xds_to_mtz (C++ function) gemmi::XdsAscii (C++ struct) gemmi::XdsAscii::apply_polarization_correction (C++ function) gemmi::XdsAscii::calculate_conversion_from_cambridge (C++ function) gemmi::XdsAscii::data (C++ member) gemmi::XdsAscii::eliminate_batchmin (C++ function) gemmi::XdsAscii::eliminate_overloads (C++ function) gemmi::XdsAscii::find_or_add_iset (C++ function) gemmi::XdsAscii::gather_iset_statistics (C++ function) gemmi::XdsAscii::get_orientation (C++ function) gemmi::XdsAscii::get_rotation_axis (C++ function) gemmi::XdsAscii::get_s0_direction (C++ function) gemmi::XdsAscii::has_cell_axes (C++ function) gemmi::XdsAscii::is_merged (C++ function) gemmi::XdsAscii::read_input (C++ function) gemmi::XdsAscii::read_stream (C++ function) gemmi::XdsAscii::Refl (C++ struct) gemmi::XdsAscii::Refl::corr (C++ member) gemmi::XdsAscii::Refl::frame (C++ function) gemmi::XdsAscii::Refl::hkl (C++ member) gemmi::XdsAscii::Refl::iobs (C++ member) gemmi::XdsAscii::Refl::iset (C++ member) gemmi::XdsAscii::Refl::maxc (C++ member) gemmi::XdsAscii::Refl::peak (C++ member) gemmi::XdsAscii::Refl::rlp (C++ member) gemmi::XdsAscii::Refl::sigma (C++ member) gemmi::XdsAscii::Refl::xd (C++ member) gemmi::XdsAscii::Refl::yd (C++ member) gemmi::XdsAscii::Refl::zd (C++ member) gemmi::XdsAscii::rot_angle (C++ function) gemmi::XdsAscii::XdsAscii (C++ function), [1] gemmi::XdsAsciiMetadata (C++ struct) gemmi::XdsAsciiMetadata::cell_axes (C++ member) gemmi::XdsAsciiMetadata::cell_constants (C++ member) gemmi::XdsAsciiMetadata::detector_distance (C++ member) gemmi::XdsAsciiMetadata::friedels_law (C++ member) gemmi::XdsAsciiMetadata::generated_by (C++ member) gemmi::XdsAsciiMetadata::incident_beam_dir (C++ member) gemmi::XdsAsciiMetadata::Iset (C++ struct) gemmi::XdsAsciiMetadata::Iset::cell_constants (C++ member) gemmi::XdsAsciiMetadata::Iset::frame_count (C++ member) gemmi::XdsAsciiMetadata::Iset::frame_number_max (C++ member) gemmi::XdsAsciiMetadata::Iset::frame_number_min (C++ member) gemmi::XdsAsciiMetadata::Iset::id (C++ member) gemmi::XdsAsciiMetadata::Iset::input_file (C++ member) gemmi::XdsAsciiMetadata::Iset::Iset (C++ function) gemmi::XdsAsciiMetadata::Iset::reflection_count (C++ member) gemmi::XdsAsciiMetadata::Iset::wavelength (C++ member) gemmi::XdsAsciiMetadata::isets (C++ member) gemmi::XdsAsciiMetadata::nx (C++ member) gemmi::XdsAsciiMetadata::ny (C++ member) gemmi::XdsAsciiMetadata::orgx (C++ member) gemmi::XdsAsciiMetadata::orgy (C++ member) gemmi::XdsAsciiMetadata::oscillation_range (C++ member) gemmi::XdsAsciiMetadata::qx (C++ member) gemmi::XdsAsciiMetadata::qy (C++ member) gemmi::XdsAsciiMetadata::read_columns (C++ member) gemmi::XdsAsciiMetadata::reflecting_range_esd (C++ member) gemmi::XdsAsciiMetadata::rotation_axis (C++ member) gemmi::XdsAsciiMetadata::source_path (C++ member) gemmi::XdsAsciiMetadata::spacegroup_number (C++ member) gemmi::XdsAsciiMetadata::starting_angle (C++ member) gemmi::XdsAsciiMetadata::starting_frame (C++ member) gemmi::XdsAsciiMetadata::version_str (C++ member) gemmi::XdsAsciiMetadata::wavelength (C++ member) gemmi::ZeroCoef (C++ struct) gemmi::ZeroCoef::Coef (C++ type) gemmi::ZeroCoef::data (C++ member) gemmi::ZeroCoef::get (C++ function) gemmi::ZeroCoef::get_ (C++ function) gemmi::ZeroCoef::has (C++ function) gemmi::zlib_description (C++ member) GEMMI_ATTRIBUTE_FORMAT (C macro) GEMMI_CIF_FILE_INPUT (C macro) GEMMI_COLD (C macro) GEMMI_DLL (C macro) GEMMI_LIKELY (C macro) GEMMI_UNLIKELY (C macro) GEMMI_VERSION (C macro)

P

POCKETFFT_NO_MULTITHREADING (C macro)

S

SERIALIZE (C macro) SERIALIZE_P (C macro) SERIALIZE_T1 (C macro) std (C++ type), [1], [2]

std::hash<gemmi::Op> (C++ struct) std::hash<gemmi::Op>::operator() (C++ function) std::hash<gemmi::ResidueId> (C++ struct) std::hash<gemmi::ResidueId>::operator() (C++ function) std::make_unique (C++ function)